PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN43952.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

GRAS

Protein Properties

Length: 54aa MW: 6151.29 Da PI: 9.2081

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN43952.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	23.1	8e-08	1	38	38	74
GRAS 38 mqRlaayfteALaarlarsvselykalppsetsekn.s 74 mqRl ay+ eAL arla++++++ykal++ e+++ + KHN43952.1 1 MQRLGAYMFEALVARLANTGTTIYKALKCYEAANAEgL 38 8****************************999865531 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	2.8E-5	1	38	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 54 aa Download sequence Send to blast
MQRLGAYMFE ALVARLANTG TTIYKALKCY EAANAEGLSS YMHMLHQIRI HMCK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN43952.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020234367.1	1e-16	scarecrow-like protein 21
TrEMBL	A0A0B2SHZ6	1e-31	A0A0B2SHZ6_GLYSO; Chitin-inducible gibberellin-responsive protein 2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50600.1	1e-13	scarecrow-like 5

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]