PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN44088.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 186aa    MW: 21700.2 Da    PI: 6.145
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN44088.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.83.4e-20350148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +l+++++ +G+++Wkt+a + g++R++k+c++rw++yl
       KHN44088.1  3 RGAWTPEEDRKLAQCIEIHGPKRWKTVAIKSGLNRCGKSCRLRWLNYL 50
                     89********************************************97 PP
2Myb_DNA-binding52.31.3e-1656101148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + eE++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
       KHN44088.1  56 RGNISDEEEDLILRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 101
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.615154IPR017930Myb domain
SuperFamilySSF466892.16E-29297IPR009057Homeodomain-like
SMARTSM007171.6E-16252IPR001005SANT/Myb domain
PfamPF002492.7E-18350IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-24457IPR009057Homeodomain-like
CDDcd001672.51E-11550No hitNo description
SMARTSM007175.0E-1455103IPR001005SANT/Myb domain
PROSITE profilePS5129420.16155105IPR017930Myb domain
PfamPF002494.4E-1556101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2558106IPR009057Homeodomain-like
CDDcd001671.72E-1060101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MNRGAWTPEE DRKLAQCIEI HGPKRWKTVA IKSGLNRCGK SCRLRWLNYL RPNIKRGNIS  60
DEEEDLILRL HRLLGNRWSL IAGRLPGRTD NEIKNYWNSH LCKKVNQKVE KPESSTRHEI  120
IGQNDQNAGD NRAMSENEVE INESGNLDVS LDVNEFFNFS EESFGFDWLN KYLELDQIPE  180
STERSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-29110525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN44088.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150343e-88AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525887.11e-135transcription factor MYB114
RefseqXP_028231799.11e-135transcription factor MYB114-like
SwissprotP102904e-49MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A368UI801e-134A0A368UI80_SOYBN; Uncharacterized protein
TrEMBLA0A445KJV31e-134A0A445KJV3_GLYSO; Anthocyanin regulatory C1 protein
STRINGGLYMA05G04900.11e-135(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.14e-51myb domain protein 66
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]