PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN44119.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 120aa    MW: 14022 Da    PI: 8.1767
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN44119.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS27.53.8e-092502573
        GRAS 25 arlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn 73
                + l++l+sp+ d+ q+la+yf++A  +r+++ ++++yk+l++ ++++ +
  KHN44119.1  2 WMLNKLSSPYSDTDQKLASYFLQAFFNRITQVGDRTYKTLASASEKTCS 50
                789************************************9777666433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.3E-6250IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MWMLNKLSSP YSDTDQKLAS YFLQAFFNRI TQVGDRTYKT LASASEKTCS FKSTRKTYSF  60
VTVGANMQKV MKEIRARMEK EVDLDIGLEG FEFVKGFEEC LRWFRVYFEA LDGEQRAFDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-20157110168Protein SHORT-ROOT
5b3h_B7e-2115756114Protein SHORT-ROOT
5b3h_E7e-2115756114Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN44119.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353062e-66AC235306.1 Glycine max strain Williams 82 clone GM_WBb0068C17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538789.17e-28protein SHORT-ROOT
RefseqXP_028189382.17e-28protein SHORT-ROOT-like
TrEMBLA0A0B2SIN01e-83A0A0B2SIN0_GLYSO; Protein SHORT-ROOT
STRINGGLYMA11G23690.12e-59(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.19e-23GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]