PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN44162.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 170aa    MW: 19212.7 Da    PI: 9.7694
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN44162.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74e-082144226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                kte Cr+f+r G C +G++C +aH+
  KHN44162.1 21 KTEMCRRFRR-GVCVHGSKCIYAHS 44
                8*********.*************8 PP
2zf-CCCH23.21.2e-075677526
                --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                 Crff+++  C+yG +C+F H+
  KHN44162.1 56 QCRFFLQNKRCHYGRTCRFLHS 77
                6********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.28E-81849IPR000571Zinc finger, CCCH-type
SMARTSM003560.00211945IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-121949IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.461946IPR000571Zinc finger, CCCH-type
SMARTSM003560.415178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5265179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-65378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-65381IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-55677IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MEAQSHGFNA ESSDSNKLMV KTEMCRRFRR GVCVHGSKCI YAHSVAELRL QRQPKQCRFF  60
LQNKRCHYGR TCRFLHSSTP LNPNPQPEVG KLDRYSSPES KRMRTCAAAP SDDGCSSAEQ  120
RIMQTSAAAD AATNASTSTV ATKNEPSYPV KFIFKNNDLQ RISRIYADWI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN44162.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028187330.11e-127mRNA decay activator protein ZFP36-like
TrEMBLA0A0B2SIL91e-125A0A0B2SIL9_GLYSO; Zinc finger CCCH domain-containing protein 9
STRINGGLYMA13G44045.11e-125(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1595477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-09C3H family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]