PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN44233.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 363aa    MW: 40323.9 Da    PI: 5.3944
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN44233.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.3e-29130191159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK++ g+ +pr+YYrCt++   gC+++k+v+rs+edp+++eitY+g+H+++
  KHN44233.1 130 LDDGYSWRKYGQKDILGALYPRGYYRCTHRnvqGCMATKQVQRSDEDPTIFEITYRGKHTCT 191
                 59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.548125193IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-29127192IPR003657WRKY domain
SuperFamilySSF1182902.09E-26129192IPR003657WRKY domain
SMARTSM007744.7E-42130192IPR003657WRKY domain
PfamPF031061.5E-27131190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDNMGDPKSI IHELLQGLEL ARQLQVYLHL PTSSQETRDL LIQKIISTFE KALEMVNCKG  60
PVPAGESSHH PLGAALIRVS DSPLSSSPRS EDSDRDFKDQ DPNAFKKRNT LPRWTKHIRV  120
TPGMGVEGPL DDGYSWRKYG QKDILGALYP RGYYRCTHRN VQGCMATKQV QRSDEDPTIF  180
EITYRGKHTC TMANNVGSSS PIPPENQEPS LNNTNPQQQN ILQNLEQQQS DLLLSLRKGL  240
RVQTENLDSP DQQSLVPFRF PLSTNIKIES QVFPSPVLEN FISSPSYMSS AASGISHFSV  300
SPSGVNSFGG NPNLANSESQ INDMIPATTT SAPNSSTVGL EFPFDQFEFD GQNFTFDNPP  360
FFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20130190868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN44233.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312320.0KT031232.1 Glycine max clone HN_CCL_107 WRKY transcription factor (Glyma06g13090.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523388.10.0probable WRKY transcription factor 30
RefseqXP_028230034.10.0probable WRKY transcription factor 30
TrEMBLA0A0B2SHC40.0A0A0B2SHC4_GLYSO; Putative WRKY transcription factor 30
STRINGGLYMA04G41701.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.12e-48WRKY DNA-binding protein 30
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]