PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN44399.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 585aa    MW: 65863.1 Da    PI: 5.3707
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN44399.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like772.4e-24199252155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  KHN44399.1 199 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 252
                 68*******************.9*******************************8 PP
2Response_reg81.33.2e-27191271109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+k +y ev+++  ++ al ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga 
    KHN44399.1  19 VLVVDDDPTWLKILEKMLKKCNY-EVTTCCLARHALSLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSKVMKGVQHGAC 113
                   89*********************.***************999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ ++el++
    KHN44399.1 114 DYLLKPIRMKELRN 127
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.1E-3516147IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.1E-4416160No hitNo description
SMARTSM004488.4E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.63818133IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.6E-2419128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.31E-2920133No hitNo description
SuperFamilySSF466893.76E-17197256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-28197257IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-21199252IPR006447Myb domain, plants
PfamPF002491.8E-7201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MDNGCFSSPR RDFPAGLRVL VVDDDPTWLK ILEKMLKKCN YEVTTCCLAR HALSLLRERK  60
DGYDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSKVMKGVQH GACDYLLKPI  120
RMKELRNIWQ HVLRKRIHEA KEFESFESFE SIHLMRNGSE LSDDGNLFAV EDVTSTKKRK  180
DADNKHDDKE CLDPSSTKKA RVVWSVDLHQ KFVKAVNQIG FDKVGPKKIL DLMNVPWLTR  240
ENVASHLQKY RLYLSRIQKE NDQRSSSSGL KHSDFPLKDM RSFGFQNSVN NQQQNDVAID  300
SYNHSDGSLQ LQNVETKSHE ADPKGIVSQS TIAKKGRILT GNIADTNMRE SLRVGLNQTF  360
APLESEENHA VFDCSMPTPY TWTEVPHMQL KEEHKSIVHL EDSFNQLPLH GKQQQHIQVD  420
QSQSVASISS APLITEEEVA ACKEPKPLFA DYKNDYANSV SSIGNAVGTF PIQPGSLIMN  480
GQSSEPISTT NSGLKTQGYN NLSSISDLEI YQSNLLLGGE VASAPSLDED LHFYWLQGEC  540
YNNMNFSLQN IGMSEYYDPG LISEAPTHLY DSADYSVIDQ GLFIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17195257163ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN44399.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537547.10.0two-component response regulator ARR11 isoform X2
RefseqXP_028196159.10.0two-component response regulator ARR11-like isoform X2
TrEMBLA0A445HIE90.0A0A445HIE9_GLYSO; Two-component response regulator ORR26 isoform B
TrEMBLK7LS220.0K7LS22_SOYBN; Uncharacterized protein
STRINGGLYMA11G37480.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-121response regulator 11
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]