PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN44432.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 145aa    MW: 16121.2 Da    PI: 7.5247
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN44432.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC32.51.8e-101693097
       NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                +  d+dvk++s+ea  l+s++ elf+  l+ +s   a e+kr+t++   i  av+r + + dfl+d+ p
  KHN44432.1  1 MALDKDVKRVSSEALFLVSRSTELFLQFLAEKSAQVAIEKKRKTVNLEHIRVAVKRHQpTRDFLLDELP 69
                6789**************************************************9976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.59E-16170IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.7E-14169IPR009072Histone-fold
PfamPF008083.6E-13254IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MALDKDVKRV SSEALFLVSR STELFLQFLA EKSAQVAIEK KRKTVNLEHI RVAVKRHQPT  60
RDFLLDELPP PSQAAKPDKP TQPAGRPKLD PAPRGTRCID QFFRKPEPEN TAQAPGQPPE  120
NPAQAQSPEN PDQDQAQSPV PVDES
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN44432.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537536.21e-99dr1-associated corepressor
RefseqXP_028195939.11e-99dr1-associated corepressor-like
TrEMBLA0A0R0HSF83e-98A0A0R0HSF8_SOYBN; Uncharacterized protein
TrEMBLA0A445HI053e-98A0A445HI05_GLYSO; Uncharacterized protein
STRINGGLYMA11G37130.15e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.14e-39nuclear factor Y, subunit C13