PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN44879.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 732aa    MW: 79580.1 Da    PI: 5.7359
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN44879.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2060115156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  KHN44879.1  60 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 115
                 688999***********************************************999 PP
2START219.41.2e-682544731206
                 HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
       START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                 ela +a++el+ +a+ +ep+W +     + +n+de++++f+++ +     ++ ea+r+++vv+m++++lve+l+d++ qW++ +     +a+tlev+s+
  KHN44879.1 254 ELAVAAMEELIGMAQMGEPLWLTTLdgtTVLNEDEYIRSFPRGIGpkpvgFKCEASRETAVVIMNHVNLVEILMDVN-QWSTVFSgivsRAMTLEVLST 351
                 57899********************99999************999********************************.********************* PP

                 T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
       START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                 g      galq+m+ae q++splvp R+++fvRy++q+g+g+w++vdvS+d+ ++ p    ++R++++pSg+li++++ng+skv+wvehv++++r +h+
  KHN44879.1 352 GvagnynGALQVMTAEVQVPSPLVPtRESYFVRYCKQHGDGTWAVVDVSLDNLRPSP----SARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHN 446
                 *******************************************************99....5************************************* PP

                 HHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 180 llrslvksglaegaktwvatlqrqcek 206
                 l+++lv+sg+a+gak+w a l+rqce+
  KHN44879.1 447 LYKQLVSSGHAFGAKRWIANLDRQCER 473
                 *************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-2339115IPR009057Homeodomain-like
SuperFamilySSF466891.75E-1950117IPR009057Homeodomain-like
PROSITE profilePS5007116.92557117IPR001356Homeobox domain
SMARTSM003891.2E-1958121IPR001356Homeobox domain
CDDcd000862.50E-1960118No hitNo description
PfamPF000464.1E-1860115IPR001356Homeobox domain
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
SuperFamilySSF559612.29E-35245475No hitNo description
PROSITE profilePS5084844.034245476IPR002913START domain
CDDcd088753.80E-128249472No hitNo description
SMARTSM002349.2E-62254473IPR002913START domain
PfamPF018521.4E-57255473IPR002913START domain
Gene3DG3DSA:3.30.530.205.8E-6348473IPR023393START-like domain
SuperFamilySSF559614.12E-25492724No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MFQPNLMEAG QLHPLDMPQN TSESDVPRIR EDDFDSATKS GSENLEGASG EDQDPRPNKK  60
KRYHRHTQHQ IQEMEAFFKE CPHPDDKQRK ELSRELGLEP LQVKFWFQNK RTQMKTQHER  120
HENTQLRTEN EKLRADNMRF REALGNASCP NCGGPTAIGE MSFDEHHLRL ENARLREEID  180
RISAIAAKYV GKPVVSYPLV SPSSVPPRPL ELGVSGGFGG QPGGIGGDMY GGAAGDLLRS  240
ISGPTEADKP IIIELAVAAM EELIGMAQMG EPLWLTTLDG TTVLNEDEYI RSFPRGIGPK  300
PVGFKCEASR ETAVVIMNHV NLVEILMDVN QWSTVFSGIV SRAMTLEVLS TGVAGNYNGA  360
LQVMTAEVQV PSPLVPTRES YFVRYCKQHG DGTWAVVDVS LDNLRPSPSA RCRRRPSGCL  420
IQEMPNGYSK VIWVEHVEVD DRGVHNLYKQ LVSSGHAFGA KRWIANLDRQ CERLASAMAT  480
NIPTVDVGVI TNPDGRKSML KLAERMVISF CAGVSASTAH TWTTLSGTGA DDVRVMTRKS  540
VDDPGRPPGI VLSAATSFWL PVSPKRVFEF LRDENSRSEW DILSNGGVVQ EMAHIANGRD  600
TGNCVSLLRV NSANSSQSNM LILQESCADS TGSFVIYAPV DIVAMNVVLN GGDPDYVALL  660
PSGFAILPDG TTAHGGGIGD IGHGGSLLTV AFQILVDSVP TAKLSLGSVA TVNNLIACTV  720
ERIKAALSGE VA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN44879.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311700.0KT031170.1 Glycine max clone HN_CCL_122 homeodomain/HOMEOBOX transcription factor (Glyma13g38430.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592816.10.0homeobox-leucine zipper protein HDG2 isoform X1
RefseqXP_028195177.10.0homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0B2SKN90.0A0A0B2SKN9_GLYSO; Homeobox-leucine zipper protein HDG2
STRINGGLYMA12G32050.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]