PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN44907.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YB

Protein Properties

Length: 231aa MW: 26511.9 Da PI: 5.0572

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN44907.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	100.1	1.8e-31	24	113	6	95
NF-YB 6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +Pi+n+++im ++l +n ++s d+ +++q+ ++++i fvt +a d+cq e rk +n++dllwa+ +lGf+dyvepl++++++yr++eg KHN44907.1 24 SKMPITNMMKIMSQILLNNVQVSYDTMDMIQQSATKYINFVTRKAKDRCQSECRKIMNAEDLLWAIEELGFNDYVEPLTTFIQRYRNIEG 113 579*************************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.7E-28	23	113	IPR009072	Histone-fold
Pfam	PF00808	6.0E-13	25	89	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	8.18E-22	25	113	IPR009072	Histone-fold
PRINTS	PR00615	9.6E-10	53	71	No hit	No description
PRINTS	PR00615	9.6E-10	72	90	No hit	No description
PRINTS	PR00615	9.6E-10	91	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MAISLPINSN NGDRVPNLVL RDKSKMPITN MMKIMSQILL NNVQVSYDTM DMIQQSATKY 60 INFVTRKAKD RCQSECRKIM NAEDLLWAIE ELGFNDYVEP LTTFIQRYRN IEGVDLFTTH 120 KEPISHIENH GPSLGPEPNL MSTLEMLHPP QPPQVNSSQP KFSIIPNTNL EMLYPNEMSS 180 TKIHLVLVVQ MMFSTTLMFL LSSIMINIEM IIEEIQLQLT IMAMDYDIGN K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-26	17	110	3	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN44907.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014628426.1	2e-67	nuclear transcription factor Y subunit beta
TrEMBL	A0A0B2SKU8	1e-169	A0A0B2SKU8_GLYSO; Nuclear transcription factor Y subunit B-9
TrEMBL	K7L2H0	1e-169	K7L2H0_SOYBN; Uncharacterized protein
STRING	GLYMA07G29695.1	1e-169	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF591	34	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	6e-31	NF-YB family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]