PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN45016.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 362aa    MW: 39693.9 Da    PI: 7.4147
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN45016.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.72.4e-28160218259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  Dg++WrKYGqK  kg+++pr+YYrC +   Cpv+k+v+r+aed++vv++tYeg+Hnh+
  KHN45016.1 160 GDGCQWRKYGQKISKGNPCPRAYYRCNMGtACPVRKQVQRCAEDESVVITTYEGNHNHS 218
                 69**************************98****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-31144220IPR003657WRKY domain
SuperFamilySSF1182901.57E-26152220IPR003657WRKY domain
PROSITE profilePS5081129.011154220IPR003657WRKY domain
SMARTSM007741.6E-32159219IPR003657WRKY domain
PfamPF031068.7E-25161217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEGKIALKKL LEVQEKAYVN DTDAINWTEE PSIKNTLGSS LLSLSLNNLE PPQNHEQQNL  60
NQLGLLQIEL EEVKKENQNL RSMLNEISEH YAALQNQLLL AMQQKKLSSS PRNNEDMQAS  120
KINNRVILQE AKIVEEQAFE ASCKKARVSV RARSESSLMG DGCQWRKYGQ KISKGNPCPR  180
AYYRCNMGTA CPVRKQVQRC AEDESVVITT YEGNHNHSLP PAARSMACTT SAALKMFLSG  240
STTSSHGSTY SYSNSDLFSP LCTSTYYPSA APSCPTITLD LTQTSKNNMK FPSAISSNHL  300
QPFPLSLHGQ PQQSEGILPS EKNLALVDVV SAAITNDPSL KAALEAAVSS IIGDSQKSLP  360
TL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-22150220877Probable WRKY transcription factor 4
2lex_A2e-22150220877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN45016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-44AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006593988.10.0probable WRKY transcription factor 47
RefseqXP_028195951.10.0probable WRKY transcription factor 47
TrEMBLA0A445HEQ50.0A0A445HEQ5_GLYSO; WRKY transcription factor 42 isoform A
TrEMBLI1LYE30.0I1LYE3_SOYBN; Uncharacterized protein
STRINGGLYMA13G17800.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139451122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.16e-48WRKY family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]