PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN45113.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 230aa    MW: 25702.8 Da    PI: 8.833
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN45113.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH308.8e-106181526
                --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                 C+++++ G Ck+Gd+C+F+Hg
  KHN45113.1 61 ACPDYQK-GNCKRGDTCQFSHG 81
                7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.36E-55585IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-65682IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6525783IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-56083IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-76181IPR000571Zinc finger, CCCH-type
SMARTSM003563291114IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MLTSAHYYSP PTISECSSSR SGSVHVAGPA IRNDKMLFLR IYPAEKARRR DPRKYHYSGT  60
ACPDYQKGNC KRGDTCQFSH GVFECWLHPS RYRTHLCKDG TTCRRRVCFF AHTTEQLRLV  120
VTDSSSSSFV SSPTSVLNSS SFSDSSPYSF VREIVNSTRN VKIEDSGLTR CVFGSPRGGF  180
LSVNGCEEEP AMERVESGKD IRARIYAKLS RENTIGASDP DIGWVSELVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN45113.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0957360.0BT095736.1 Soybean clone JCVI-FLGm-19F20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304563.21e-136zinc finger CCCH domain-containing protein
RefseqXP_028235023.11e-136zinc finger CCCH domain-containing protein 23-like
SwissprotO821993e-57C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A0B2SJT71e-169A0A0B2SJT7_GLYSO; Zinc finger CCCH domain-containing protein 20
STRINGGLYMA06G05300.11e-135(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.22e-53C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  4. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]