PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN45121.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 242aa    MW: 27422.5 Da    PI: 6.9369
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN45121.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-10165213355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +hn +Er RR++i +++  L+el+P +     k   Ka +L + ++Y++ Lq
  KHN45121.1 165 NSHNLAERVRREKISERMRLLQELVPGC----EKITGKAVMLDEIINYVQLLQ 213
                 58*************************9....677***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.11E-17159227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.07E-7160208No hitNo description
PROSITE profilePS5088815.345162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16163229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-7165213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-9168218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MNCDSHFVQY VSDSNFEHMA LKVPSIGQTG CYDIDNNIGY LPNHNPSNES GIERNQLNNE  60
KSKHEDSTSE EGAAPGEHKR KRGLYYNVTF SSNKNAEGET LQNSSGKSCD DVKEQCEKKP  120
KFAQNSAANL CGKQLLKHKK DDSESEEAPK ENFIHVRTRR GQATNSHNLA ERVRREKISE  180
RMRLLQELVP GCEKITGKAV MLDEIINYVQ LLQQQVEQLN FNVEQIRSKD VSKGLDNLLT  240
KI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN45121.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014632747.11e-163transcription factor bHLH74
RefseqXP_028235005.11e-163transcription factor bHLH74-like
TrEMBLA0A0B2SED91e-179A0A0B2SED9_GLYSO; Transcription factor bHLH74
STRINGGLYMA06G05181.11e-162(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2654123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-37bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]