PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN45460.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-other
Protein Properties Length: 67aa    MW: 8044.27 Da    PI: 11.2869
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN45460.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.95.3e-06561153
                TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC...TS-HHHHHHHHHHHHH CS
    Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl...gLterqVkvWFqNrRa 53
                r+kRttf++eq + L ++ e+   +p +e++ e+ + +   g+t r+  vW  N R 
  KHN45460.1  5 RKKRTTFSSEQKNKLIRFAESvGWKPRKEKKDEIESFCsemGITRRKFVVWLSNNRH 61
                89*************99888677788877777776665555*************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-21263IPR009057Homeodomain-like
PROSITE profilePS500719.782266IPR001356Homeobox domain
SuperFamilySSF466894.79E-15262IPR009057Homeodomain-like
TIGRFAMsTIGR015653.3E-20460IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MRSKRKKRTT FSSEQKNKLI RFAESVGWKP RKEKKDEIES FCSEMGITRR KFVVWLSNNR  60
HQAINDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN45460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006593245.12e-42zinc-finger homeodomain protein 2
RefseqXP_028193348.12e-42zinc-finger homeodomain protein 2-like
TrEMBLA0A0B2SK824e-41A0A0B2SK82_GLYSO; ZF-HD homeobox protein
TrEMBLA0A445HRG95e-41A0A445HRG9_GLYSO; Zinc-finger homeodomain protein 3
TrEMBLK7LVE15e-41K7LVE1_SOYBN; Uncharacterized protein
STRINGGLYMA12G29001.19e-42(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15282511
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.18e-15homeobox protein 33
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]