PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN45484.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 512aa    MW: 56358 Da    PI: 7.0938
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN45484.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.8e-30167225259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg++WrKYGqK  kg+++pr+YYrCt a  Cpv+k+v+r+a+d +++++tYeg+Hnh+
  KHN45484.1 167 HDGCQWRKYGQKIAKGNPCPRAYYRCTLApACPVRKQVQRCADDMSILITTYEGTHNHP 225
                 7**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-31152227IPR003657WRKY domain
SuperFamilySSF1182904.18E-27159227IPR003657WRKY domain
PROSITE profilePS5081128.529161227IPR003657WRKY domain
SMARTSM007741.8E-35166226IPR003657WRKY domain
PfamPF031061.5E-26168225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
EDKLESAKAE MSKVKEENER LKMMIERVGK NYHSLQLRFF DILHRETSNK GVEDSAVSLD  60
EVEEPKLVSL CLGTSPWEHK KDGIICNSSK HKENEDLEAS LTLGLDCKGV SSKEQVSDMN  120
TSEEKEEDST NKLVRTKDGG DEISEITPPA KRARVCVRAR CDSPVMHDGC QWRKYGQKIA  180
KGNPCPRAYY RCTLAPACPV RKQVQRCADD MSILITTYEG THNHPIPASA TAMASTTSAA  240
VSMLLSGSST SQPTDHSFAY HANSPTLFSG VNFSLLDQPR ANQVLLPTPS SHLLPTITLD  300
LTSTPSYSLN QGNCLPSNFA STPRFPPLSL NFWSPESNIP LSFWGKGIPN NGTIPIDKTH  360
IKPFNIGNQF QEHFYQHYFK NQTPFREALA ETLTKAISTD TSFRSAIAAA VSSIRGQGSS  420
SENKGDGEVL GSGLSLKLGE HPQLASSNSL NKNEKECLTG YFNRSSSSSS SSQGGNSMLL  480
QPQWPFSIRK TSTPPSNVDY INHWISEINS HH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-20157228878Probable WRKY transcription factor 4
2lex_A2e-20157228878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN45484.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028216875.10.0probable WRKY transcription factor 72
TrEMBLA0A445FB880.0A0A445FB88_GLYSO; Putative WRKY transcription factor 72 isoform A
STRINGGLYMA19G02440.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.14e-57WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]