PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN45491.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 91aa    MW: 10365.7 Da    PI: 8.5213
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN45491.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.4e-0819581554
                HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                +i +  ++Lr+l+P+ +   +s K+s + +L+++++YI+sL
  KHN45491.1 19 QIIDLVSKLRQLVPEiR-DRRSDKVSASKVLQETCNYIRSL 58
                5667779********76.99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.645458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-91974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-51958IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-91978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSRRSRQQS ASTRISDDQI IDLVSKLRQL VPEIRDRRSD KVSASKVLQE TCNYIRSLHR  60
EVDDLSERLS QLLATIDADS PEAAIIRSLI N
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN45491.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311281e-151KT031128.1 Glycine max clone HN_CCL_66 bHLH transcription factor (Glyma19g02510.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543767.13e-56transcription factor PRE5
RefseqXP_007151219.13e-56hypothetical protein PHAVU_004G027700g
RefseqXP_014507201.13e-56transcription factor PRE5
RefseqXP_017438920.13e-56PREDICTED: transcription factor PRE5
RefseqXP_027923623.13e-56transcription factor PRE5
RefseqXP_028196915.13e-56transcription factor PRE5-like
RefseqXP_028217318.13e-56transcription factor PRE5-like
SwissprotQ9LJX12e-43PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0K2CT677e-55A0A0K2CT67_SOYBN; BHLH transcription factor (Fragment)
TrEMBLA0A0S3T7L77e-55A0A0S3T7L7_PHAAN; Uncharacterized protein
TrEMBLA0A1S3UMB67e-55A0A1S3UMB6_VIGRR; transcription factor PRE5
TrEMBLA0A445HCA17e-55A0A445HCA1_GLYSO; Transcription factor PRE5
TrEMBLV7C1I47e-55V7C1I4_PHAVU; Uncharacterized protein
STRINGGLYMA13G05280.11e-55(Glycine max)
STRINGGLYMA19G02510.11e-55(Glycine max)
STRINGXP_007151219.11e-55(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.16e-38bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]