PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN45646.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 297aa    MW: 34876.6 Da    PI: 11.5154
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN45646.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.74.3e-34171082102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y++++d+++++li w   +nsf+vld+ +f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll++i 
    KHN45646.1  17 FVIKTYNMVNDPTTDKLIMWGPANNSFIVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQKHLLRNIA 104
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
    KHN45646.1 105 RRKH 108
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-5413106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3614106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-3314106IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.3E-181740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-2917106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-185567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-186880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMEHNIIVNN NNVIAPFVIK TYNMVNDPTT DKLIMWGPAN NSFIVLDPLD FSHSLLPAFF  60
KHNNFSSFVR QLNTYGFRKV DPDRWEFANE WFLRGQKHLL RNIARRKHGG AGRSNFNLHS  120
HHHPLKVEEL DDEAMVMEIA RLKEEQKALE EELQGMNKRL ETTEKRPQQM MAFLSKVVED  180
PQVLSRILRE REKKHLGEKK RRLIRRQRRR RRRRPPASRR SSKKTKVIII SCLRRRRQGW  240
KSIIIIFVRL WRRGIGGNRV VMGTIVAYLG RGVFFGEMAA EGNAVPPYPF SLLEGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-251410617120Heat shock factor protein 1
5d5u_B3e-251410626129Heat shock factor protein 1
5d5v_B3e-251410626129Heat shock factor protein 1
5d5v_D3e-251410626129Heat shock factor protein 1
5hdg_A3e-25141067110Heat shock factor protein 1
5hdn_A3e-25141067110Heat shock factor protein 1
5hdn_B3e-25141067110Heat shock factor protein 1
5hdn_C3e-25141067110Heat shock factor protein 1
5hdn_D3e-25141067110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199213KRRLIRRQRRRRRRR
2200214RRLIRRQRRRRRRRP
3204209RRQRRR
4204211RRQRRRRR
5204212RRQRRRRRR
6205212RQRRRRRR
7205213RQRRRRRRR
8206212QRRRRRR
9207213RRRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN45646.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340360.11e-165heat stress transcription factor 16
RefseqXP_028248211.11e-165heat stress transcription factor C-1-like
SwissprotQ9LV524e-82HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A0B2SFW70.0A0A0B2SFW7_GLYSO; Heat stress transcription factor C-1
STRINGGLYMA09G32300.11e-165(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.18e-74heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]