PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN45678.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 592aa    MW: 68483.8 Da    PI: 6.4279
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN45678.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix926.1e-29126211187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW++qe+l+L+e+r++++ ++++++ k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r+  + +++++f+qlea
  KHN45678.1 126 RWPRQETLTLLEIRSRLDPKFKEANHKGPLWDEVSRIMcEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRH--DGKHYRFFRQLEA 211
                 8***********************************998*******************************985..5557*******85 PP
2trihelix446e-14429507283
    trihelix   2 WtkqevlaLiearremeerlrrgk.lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                 W+++e+  L ++r eme+r+  ++ +++  W+ v+ km++ g+ers+ +Ckekwe++nk+ k+ k+++++     s++c yf+
  KHN45678.1 429 WQESEITRLEQLRAEMETRFPYSEiSEEVSWDVVATKMADFGYERSALMCKEKWESINKEEKNSKNRKENL----SRNCFYFK 507
                 *********************876599********************************988888888775....78999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.13123186IPR001005SANT/Myb domain
PROSITE profilePS500906.98125184IPR017877Myb-like domain
PfamPF138378.1E-20126212No hitNo description
CDDcd122032.54E-20126191No hitNo description
SMARTSM007170.0056425488IPR001005SANT/Myb domain
PfamPF138374.1E-10427510No hitNo description
PROSITE profilePS500906.272428486IPR017877Myb-like domain
CDDcd122032.17E-15429493No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MEDHQHQHHH HHFGMNDLRQ VVNNGPRPAH TTFPSMPPHP TEELFPGHHH RNLTPLPTHH  60
PQQQQHFEVM MFGRDIMPPG LHDFASTPHD SAVATTTITL PTPPVTCGFD AAEGAGCIGG  120
DPFTGRWPRQ ETLTLLEIRS RLDPKFKEAN HKGPLWDEVS RIMCEEHGYQ RSGKKCREKF  180
ENLYKYYKKT KEGKAGRHDG KHYRFFRQLE ALYGENSNTV SVPETNVVVG SIHFQGPSQT  240
NQDNNKFQSH NNNNNRHCDS LSLTNSTNFD TSTSEGHDGN DHSMENESME KRIKRKSGRS  300
WKVKIKDFID SQMRKLVEKQ KEWLDKLVKT LEEKEKERML REEEWRKQEA NRLEREQKFW  360
AKERAWIEAR DAALMEALHK LTGREIMKVE TDPEGTINVM TAAEVQNQNN EDESEILNSS  420
NVIRGADSWQ ESEITRLEQL RAEMETRFPY SEISEEVSWD VVATKMADFG YERSALMCKE  480
KWESINKEEK NSKNRKENLS RNCFYFKNNH EDQQQSSLYD QGSAYCDDDV NEQGKEIERL  540
QTNNGSSSPS KSNIVGNVVP SDSCFPFLMG ADQGGNLWEN YGLKLNKENQ NH
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN45678.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006588827.10.0trihelix transcription factor PTL
RefseqXP_028183618.10.0trihelix transcription factor PTL-like
TrEMBLA0A0B2SLE30.0A0A0B2SLE3_GLYSO; Trihelix transcription factor GT-2
STRINGGLYMA10G07730.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-110Trihelix family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]