PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN45696.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 215aa    MW: 23904.2 Da    PI: 5.8668
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN45696.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.65.1e-16117189171
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkr 71 
                 +W++  + +L+ea++e+ ++l rg+l++ +Weev++++  r +  ++s +qCk+k +nl+kryk ++++++++
  KHN45696.1 117 EWSDTAIVCLLEAYTEKFTQLIRGNLRGRDWEEVAAVVseRCENQSKSVEQCKNKVDNLKKRYKLERHRMSSG 189
                 5*************************************666677899*******************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-17115187No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MASCDDDDDF SLLRDDPPHH LHQPYAPHHH HFSPSAVSVA SASSVPPKPA AAADADAEDF  60
SNPFDEDDDG EKRKERDEIG EGAASYGFNN KRSKTTAPSN GVGAVSGGAE YRKDREEWSD  120
TAIVCLLEAY TEKFTQLIRG NLRGRDWEEV AAVVSERCEN QSKSVEQCKN KVDNLKKRYK  180
LERHRMSSGY QPLALVQAIG TDRRKFSPGE VLRRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN45696.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535275.11e-115uncharacterized protein LOC100805176
RefseqXP_028185941.11e-115uncharacterized protein LOC114372534
TrEMBLA0A0B2SG181e-159A0A0B2SG18_GLYSO; Uncharacterized protein
STRINGGLYMA10G07490.11e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.21e-44Trihelix family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]