PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN45854.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 91aa    MW: 10492.9 Da    PI: 9.4517
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN45854.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74e-11652347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT+   +++ +a + + ++   +W+t+ar +g g+t +++k ++ k+
       KHN45854.1  6 GWTPKQNKRFENALAIFDKDtpdRWHTVARAVG-GKTVEEVKRHYEKL 52
                     6********************************.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.775257IPR017884SANT domain
SMARTSM007171.1E-7355IPR001005SANT/Myb domain
SuperFamilySSF466892.69E-13561IPR009057Homeodomain-like
PfamPF002492.2E-7652IPR001005SANT/Myb domain
CDDcd001671.54E-6753No hitNo description
Gene3DG3DSA:1.10.10.605.3E-4759IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MASSQGWTPK QNKRFENALA IFDKDTPDRW HTVARAVGGK TVEEVKRHYE KLVEDVKKIE  60
EGHVPLPNYR SAARGYGYMD EETRMKALSL Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-30191193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN45854.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354001e-138AC235400.1 Glycine max strain Williams 82 clone GM_WBb0120P11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523829.12e-63protein RADIALIS-like 3
RefseqXP_028226986.12e-63protein RADIALIS-like 3
SwissprotF4JVB84e-32RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A445KVC94e-62A0A445KVC9_GLYSO; Protein RADIALIS-like 1
TrEMBLI1JTA74e-62I1JTA7_SOYBN; Uncharacterized protein
STRINGGLYMA04G03400.17e-63(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-34RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]