PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN45919.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family E2F/DP
Protein Properties Length: 357aa    MW: 40462.5 Da    PI: 5.3549
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN45919.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP841.2e-2674139171
     E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                 r+++sL+llt+kf++l++ +++g+++ln  a+ L   +v  ++RRiYDi+NVLe+++liek++kn+i+wkg
  KHN45919.1  74 RYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEIL---EV--QKRRIYDITNVLEGVGLIEKTSKNHIKWKG 139
                 6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-2871140IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.4E-3574139IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.9E-1774137IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.1E-2576139IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.13E-33150254No hitNo description
SuperFamilySSF1440743.92E-25150254No hitNo description
PfamPF164211.9E-24155254IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGQRYENNVF KSHISNIEAA PGMTQTVHLP PPLQTDPTIR GKQNGKPKGS RNAKSAAHRP  60
YADSTNSTAV NNCRYDSSLG LLTKKFVSLI QDAKDGTLDL NRTAEILEVQ KRRIYDITNV  120
LEGVGLIEKT SKNHIKWKGC DGLGPRELED QVNSLKAEVD SLYAEECKLD DCIRKKQELL  180
RNLEESESSQ KYLFITKEDI LGLPCFQNQE IIAIKAPKAS SIEVPDPDEE LGFRQRQYKM  240
IVRSAIGPIY LYLLRYFSAV TLQPKVCKDD HKFEDDSAKP MKLTNPSWNS DLYRKRGVGL  300
LESQNDENNP SERFSLQGSQ AFGIQEITPT DFEMEDDYWF QSDPGVSQTE LWGSNIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-2473140674PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN45919.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0970030.0BT097003.1 Soybean clone JCVI-FLGm-15J6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523527.10.0transcription factor E2FC isoform X2
RefseqXP_028227477.10.0transcription factor E2FC-like isoform X2
TrEMBLA0A0R0K7P30.0A0A0R0K7P3_SOYBN; Uncharacterized protein
TrEMBLA0A445KUI90.0A0A445KUI9_GLYSO; Transcription factor E2FC isoform A
STRINGGLYMA04G02720.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118852529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.21e-79E2F/DP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]