PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46203.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 588aa    MW: 65486.4 Da    PI: 4.654
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46203.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.22.7e-52201461127
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lp GfrF+Ptdeel+++yL+ k++g+  ++  vi+e+d++k+ePwdLp  + v++++ ew+fF+++d+ky++g+r nrat++gyWkatgkd++++s ++
  KHN46203.1  20 LPLGFRFRPTDEELIDYYLRSKINGNGDDV-WVIREIDVCKWEPWDLPdlSVVRNKDPEWFFFCPQDRKYPNGHRLNRATSHGYWKATGKDRRIKS-GS 116
                 699************************999.89**************96447777888**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyr 127
                 +l+g+kktLvfy+grapkg++t+Wvmheyr
  KHN46203.1 117 TLIGMKKTLVFYTGRAPKGKRTNWVMHEYR 146
                 *****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-6114170IPR003441NAC domain
PROSITE profilePS5100556.2920170IPR003441NAC domain
PfamPF023651.4E-2721146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MGAVVECYPQ PRTALSLNTL PLGFRFRPTD EELIDYYLRS KINGNGDDVW VIREIDVCKW  60
EPWDLPDLSV VRNKDPEWFF FCPQDRKYPN GHRLNRATSH GYWKATGKDR RIKSGSTLIG  120
MKKTLVFYTG RAPKGKRTNW VMHEYRPTLK ELDGTNPGQN PYVLCRLFKK QDESLEASNG  180
DDVDRTASTP MTANYSPDEI QSDSALVPAS SSQVTEDDKP LPVISENSEE AISNIITPGE  240
IHSDGCDAPD AQDQIVEPVA EEDQPLNVDI FYDPTNLPLD DKLFSPVHAH FPTDFYYQAN  300
NQSELQYGTN ENISEFFDSV VNWDAFSHDT SSLDLSSSFL INNTDNGSGS DSDVEMTNMP  360
HLQALHNYPK EAVEQKSNVG LFQNNFQMAL SNDSTMGQVH NMVNYCEQPR NFDAFVSADT  420
GIRIRTRPGR NEQPNMNTMV QSQGIAPRRI RLGVVRRPLG SQDGSCACAP EDHNSKTIIT  480
AEKKASESEN HAADGSSTVS DVSSTVTDDV DEPEEASPES TDLRNISEKH VATAESVSGS  540
KVLLVNRRVH YTSKVSSNRA TWSNVLAVSA AVLVSAILLV NIWAYVRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-461117411169NO APICAL MERISTEM PROTEIN
1ut4_B3e-461117411169NO APICAL MERISTEM PROTEIN
1ut7_A3e-461117411169NO APICAL MERISTEM PROTEIN
1ut7_B3e-461117411169NO APICAL MERISTEM PROTEIN
3swm_A3e-461117414172NAC domain-containing protein 19
3swm_B3e-461117414172NAC domain-containing protein 19
3swm_C3e-461117414172NAC domain-containing protein 19
3swm_D3e-461117414172NAC domain-containing protein 19
3swp_A3e-461117414172NAC domain-containing protein 19
3swp_B3e-461117414172NAC domain-containing protein 19
3swp_C3e-461117414172NAC domain-containing protein 19
3swp_D3e-461117414172NAC domain-containing protein 19
4dul_A3e-461117411169NAC domain-containing protein 19
4dul_B3e-461117411169NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN46203.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5690450.0JX569045.1 Glycine max NAC transcription factor (NAC012) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001276287.10.0NAC domain protein
RefseqXP_028213974.10.0protein NTM1-like 9
TrEMBLA0A0B2SN010.0A0A0B2SN01_GLYSO; NAC domain-containing protein 78
STRINGGLYMA02G38710.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.17e-99NAC transcription factor-like 9
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]