PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN46233.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

M-type_MADS

Protein Properties

Length: 61aa MW: 7005.15 Da PI: 10.9795

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN46233.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.2	1.4e-30	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien++nrqvtf+kRrng+lKK ELS+LCdaev vi+fsstgklyeys+ KHN46233.1 10 RIENSTNRQVTFCKRRNGLLKKTRELSILCDAEVGVIVFSSTGKLYEYSN 59 8***********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.875	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.0E-40	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-28	2	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.39E-37	2	60	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-30	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.9E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-30	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-30	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 61 aa Download sequence Send to blast
MGRGKIPIRR IENSTNRQVT FCKRRNGLLK KTRELSILCD AEVGVIVFSS TGKLYEYSNT 60 R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	7e-20	1	60	1	60	MEF2C
5f28_B	7e-20	1	60	1	60	MEF2C
5f28_C	7e-20	1	60	1	60	MEF2C
5f28_D	7e-20	1	60	1	60	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269\|PubMed:22176531, ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN46233.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006584951.1	1e-36	MADS-box transcription factor 23 isoform X2
Refseq	XP_028247220.1	1e-36	MADS-box transcription factor 23-like isoform X2
Swissprot	Q38836	9e-30	AGL11_ARATH; Agamous-like MADS-box protein AGL11
TrEMBL	A0A0B2SN43	3e-36	A0A0B2SN43_GLYSO; Agamous-like MADS-box protein AGL11
TrEMBL	A0A1S3URD6	1e-34	A0A1S3URD6_VIGRR; MADS-box transcription factor 23
STRING	GLYMA08G06991.1	4e-37	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.2	4e-32	MIKC_MADS family protein

Publications ? help Back to Top
Ezquer I, et al. The Developmental Regulator SEEDSTICK Controls Structural and Mechanical Properties of the Arabidopsis Seed Coat. Plant Cell, 2016. 28(10): p. 2478-2492 [PMID:27624758]