PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN46418.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 593aa MW: 67406.6 Da PI: 6.3292

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN46418.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.6	1.9e-29	41	124	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ +r+++lk+plWeev++k++e g++rs+k+Ckek+en+ k++k++ke++++++ + +t+++fdql+ KHN46418.1 41 RWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVARKLSELGYHRSAKKCKEKFENVYKYHKRTKESRSGKH--EGKTYKFFDQLQ 124 8******************************************************************964..4557****98 PP
2	trihelix	100.5	1.4e-31	407	492	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+++e +++++ k+p We++s+ m + g++rs+k+Ckekwen+nk++kk+ke++k+r e+s+tcpyf++lea KHN46418.1 407 RWPKTEVHALIRLRTSLEAKYQENGPKAPFWEDISAGMLRLGYNRSAKRCKEKWENINKYFKKVKESNKQR-REDSKTCPYFHELEA 492 8*******************************************************************8.78999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.009	38	100	IPR001005	SANT/Myb domain
Pfam	PF13837	3.7E-20	40	126	No hit	No description
PROSITE profile	PS50090	7.05	40	98	IPR017877	Myb-like domain
CDD	cd12203	2.73E-23	40	105	No hit	No description
PROSITE profile	PS50090	7.224	400	464	IPR017877	Myb-like domain
SMART	SM00717	0.14	404	466	IPR001005	SANT/Myb domain
Pfam	PF13837	1.6E-21	406	493	No hit	No description
CDD	cd12203	1.56E-25	407	471	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
MDANSGEEEN NNKGKEGEEE EEEEGDNKIN SNNNSLCGGN RWPRQETLAL LKIRSDMDAV 60 FRDSSLKGPL WEEVARKLSE LGYHRSAKKC KEKFENVYKY HKRTKESRSG KHEGKTYKFF 120 DQLQALENQF TVSYSPKPQP TLATTTNIIT LPPPTRPSDT TAISYVTTTV PSTNPTIISP 180 SPQPPTHATT TTTITSPTVA TNPKNPPQSN NNSNIPNYSL LNMNNLFSTT STSSSTASDE 240 DLEEKYRKKR KWKDYFRRLT RQVLAKQEEM QKRFLEAIDN REREQVAQQE AWRIQEMARI 300 NREHELLVQE RSTAAAKNAA VIAFLQQLSG QHQNSTTTKA GANFLQQPLP QQVQPPSNSD 360 NIEIQKMNNG HSVVAAATPT TVVAATAIAT TAVTTTPSSL SSLSSSRWPK TEVHALIRLR 420 TSLEAKYQEN GPKAPFWEDI SAGMLRLGYN RSAKRCKEKW ENINKYFKKV KESNKQRRED 480 SKTCPYFHEL EALYKEKSKT TQNPFGASFH NMKPHEMMEP LMVQPEQQWR PPTQYEQGAA 540 KENNNSERKE REEEEEEEDD DENEEGDLES VEDEGGNRYE IATNKLSSVD TVE

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

MDANSGEEEN NNKGKEGEEE EEEEGDNKIN SNNNSLCGGN RWPRQETLAL LKIRSDMDAV  60
FRDSSLKGPL WEEVARKLSE LGYHRSAKKC KEKFENVYKY HKRTKESRSG KHEGKTYKFF  120
DQLQALENQF TVSYSPKPQP TLATTTNIIT LPPPTRPSDT TAISYVTTTV PSTNPTIISP  180
SPQPPTHATT TTTITSPTVA TNPKNPPQSN NNSNIPNYSL LNMNNLFSTT STSSSTASDE  240
DLEEKYRKKR KWKDYFRRLT RQVLAKQEEM QKRFLEAIDN REREQVAQQE AWRIQEMARI  300
NREHELLVQE RSTAAAKNAA VIAFLQQLSG QHQNSTTTKA GANFLQQPLP QQVQPPSNSD  360
NIEIQKMNNG HSVVAAATPT TVVAATAIAT TAVTTTPSSL SSLSSSRWPK TEVHALIRLR  420
TSLEAKYQEN GPKAPFWEDI SAGMLRLGYN RSAKRCKEKW ENINKYFKKV KESNKQRRED  480
SKTCPYFHEL EALYKEKSKT TQNPFGASFH NMKPHEMMEP LMVQPEQQWR PPTQYEQGAA  540
KENNNSERKE REEEEEEEDD DENEEGDLES VEDEGGNRYE IATNKLSSVD TVE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN46418.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006606164.1	0.0	trihelix transcription factor GT-2
Swissprot	Q39117	1e-144	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A0B2SNM1	0.0	A0A0B2SNM1_GLYSO; Trihelix transcription factor GT-2
STRING	GLYMA20G30650.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-78	Trihelix family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]