PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46419.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 552aa    MW: 62676.3 Da    PI: 6.0362
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46419.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.52.7e-211681786
    trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                m+ ++r+++ k+plWeevs+km+e g++rs+k+Ckek+en+ k++k++keg++++  ++ +t+++fdql+
  KHN46419.1  1 MDVAFRDASVKGPLWEEVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKEGRSGK--QDGKTYRFFDQLQ 68
                5678999**********************************************95..67778******98 PP
2trihelix106.51.8e-33375460187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k ev+aLi++r++m+e+++++  k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a
  KHN46419.1 375 RWPKVEVQALIKLRTSMDEKYQENGPKGPLWEEISASMKKLGYNRNAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 460
                 8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122036.27E-15149No hitNo description
PfamPF138373.0E-14670No hitNo description
PROSITE profilePS500905.1221542IPR017877Myb-like domain
SMARTSM007172.7E-4372434IPR001005SANT/Myb domain
PROSITE profilePS500907.201374432IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-4374431IPR009057Homeodomain-like
PfamPF138374.0E-22374461No hitNo description
CDDcd122034.39E-29374439No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MDVAFRDASV KGPLWEEVSR KMAELGYHRS SKKCKEKFEN VYKYHKRTKE GRSGKQDGKT  60
YRFFDQLQAL ENHSPTPHSP NPSSKPLQSA PSRVVATTTA SSMSLPIPTP TTTVPMQPIL  120
SNTIPTSSVP NITVPSTTIL PITIPQPILT TPSINLTIPS YPPSNPTNFP PPSNPTPPLS  180
FPTDTFSNST SSSSTSSDET LERRRKRKRK WKDFFERLMK EVIEKQEELQ KKFLEAIEKR  240
EHDRIAREEA WRVQEMQRIN REREILAQER SIAAAKDAAV MSFLQKIAEQ QNLGQALTNI  300
NLVQPQPQLQ PQPPVQQQVT PPNPMQQPLP VIVTQPVVLP VVSQVTNMEI MKADNNNNNN  360
NNNNCENFLP PSSSRWPKVE VQALIKLRTS MDEKYQENGP KGPLWEEISA SMKKLGYNRN  420
AKRCKEKWEN INKYFKKVKE SNKRRPEDSK TCPYFHQLDA LYRQKHAKPE SAVAPLMVQP  480
EQQWPPQQQD DRDITMEDME NEDDEYEEER EGEEEEEEDE EDEEGGGGNY EIVANKTSGG  540
GAAAASVGAS TE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208RRKRKR
2203209RRKRKRK
3204209RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN46419.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556152.30.0trihelix transcription factor GT-2
RefseqXP_028220974.10.0trihelix transcription factor GT-2-like
SwissprotQ391171e-131TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0B2SPD20.0A0A0B2SPD2_GLYSO; Trihelix transcription factor GT-2
STRINGGLYMA20G30640.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-53Trihelix family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]