PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46508.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 241aa    MW: 27010.5 Da    PI: 7.8149
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46508.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS111.61.1e-34362351219
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaa.rlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                 l++lL +c++  + g++++a+ +  +ls+laspdgd+mqR+a++f eALa  ++a++  ++ k l+  +t +  + e+  + klf++  P++k++h ++
  KHN46508.1  36 LINLLNSCVKLTELGNFNAADVAFYHLSHLASPDGDSMQRVATCFIEALAYcQVAKNLRGVPKVLHLVKTLS--TPEQQLVKKLFFDFYPFIKIAHTIT 132
                 6799*********************************************96378889999999997777763..667777899**************** PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 Nq+I ea +g++ +             ++L+  L   +   p++ iT++++    +ke le++g  L   A++l  pf+fn+ v+++le+l++e+L +k
  KHN46508.1 133 NQTIIEACKGKQPL-------------MSLISCLKPSTPTCPKITITAIHE----KKEVLEKMGLHLGVEAQRLLFPFQFNP-VVSSLENLDPETLPIK 213
                 **********9765.............89999999888999**********....9**************************.799************* PP

        GRAS 198 pgEalaVnlvlqlhrlldesvs 219
                 +gE la+++vlqlh+ll+++ +
  KHN46508.1 214 KGEPLAISSVLQLHSLLASDDD 235
                 ****************987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.69610241IPR005202Transcription factor GRAS
PfamPF035143.7E-3236235IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MQGVSRQPKL WTQVHSTSRC VRVQGMNWDD DERIRLINLL NSCVKLTELG NFNAADVAFY  60
HLSHLASPDG DSMQRVATCF IEALAYCQVA KNLRGVPKVL HLVKTLSTPE QQLVKKLFFD  120
FYPFIKIAHT ITNQTIIEAC KGKQPLMSLI SCLKPSTPTC PKITITAIHE KKEVLEKMGL  180
HLGVEAQRLL FPFQFNPVVS SLENLDPETL PIKKGEPLAI SSVLQLHSLL ASDDDDEMAK  240
M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-133022013217Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN46508.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028195049.11e-113scarecrow-like protein 3
TrEMBLA0A0B2SNU71e-179A0A0B2SNU7_GLYSO; Scarecrow-like protein 3
STRINGGLYMA12G01470.21e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3600122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-49scarecrow-like 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]