PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46510.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 247aa    MW: 27942.2 Da    PI: 8.6703
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46510.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-1159106355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + h ++Er RR++i + f  L  l+P +     kK++K++ L +A++Y+k+L+
  KHN46510.1  59 QDHIIAERMRREKISQQFIALSALIPDL-----KKMDKVSLLGEAIRYVKQLK 106
                 5699************************.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.41856105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-1659122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-960105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1560121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.58E-1061110No hitNo description
SMARTSM003531.4E-1262111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
SYILSFDNMN PPTIKVESAS KPGTKVVNLE KALPSKNEPT RPQENKKMGS FARSSHHTQD  60
HIIAERMRRE KISQQFIALS ALIPDLKKMD KVSLLGEAIR YVKQLKEQVK LLEEQSKRKN  120
EESVMFAKKS QVFLADEDVS DTSSNSCEFG NSDDPSSKAN FLSLPEVEAR VSKKNVLIRI  180
LCEKEKTVLV NIFREIEKLH LSIIYSSALS FGSSVLDTTI VAEMEDEFNM GVKELARNLR  240
VGLMQFM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN46510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524708.11e-179transcription factor bHLH18
RefseqXP_028232248.11e-179transcription factor bHLH18-like
TrEMBLA0A0B2SNJ11e-179A0A0B2SNJ1_GLYSO; Transcription factor bHLH25 (Fragment)
STRINGGLYMA05G23330.21e-178(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-56bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]