PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46585.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 467aa    MW: 50022.3 Da    PI: 8.9687
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46585.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.6e-115075227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                + ++C +++rtG C yG+rC+++H++
  KHN46585.1 50 GVPNCVYYMRTGVCGYGGRCRYNHPR 75
                6799********************96 PP
2zf-CCCH35.91.3e-1196120327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C+++++tGtCk+G++CkF H++
  KHN46585.1  96 EPPCQYYLKTGTCKFGASCKFRHPK 120
                 79*********************96 PP
3zf-CCCH37.15.3e-12141166227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+++++tG+Ck+G +CkF+H++
  KHN46585.1 141 GEKECSYYLKTGQCKFGISCKFHHPQ 166
                 7899********************97 PP
4zf-CCCH36.39.5e-12297322126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +++++C++++rtG Ck+G  C+++H+
  KHN46585.1 297 PGEPECQYYLRTGDCKFGLACRYHHP 322
                 5799*********************9 PP
5zf-CCCH33.28.6e-11340362426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  +C f++++G+Ck+G++CkF H+
  KHN46585.1 340 QPCAFYLQNGHCKFGSTCKFDHP 362
                 69********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.6624876IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-54875IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-85075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-65277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-45475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.50293121IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-793120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-696121IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-996120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-698119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178139167IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5139166IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6141167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4145165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061296324IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5296323IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-9298322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-5300323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.216336364IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-6336363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6339367IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8340362IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-5340362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016740Molecular Functiontransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MDLYGRSPAR NGPNPVNQPE WSSPGTDTAL EESMWHLTLG GGESYPERSG VPNCVYYMRT  60
GVCGYGGRCR YNHPRDRAAV AAAVRATGDY PERVGEPPCQ YYLKTGTCKF GASCKFRHPK  120
NGGGYLSQAP LNVYGYPLRP GEKECSYYLK TGQCKFGISC KFHHPQPAGT SLPASAAQFY  180
QQVQSPTVPL PEQYGGASSS LRVARPPILP GSYVQGAYGP VLLSPGVVQF PGWSHYSAPV  240
SPVLSPGTQP AVGATSLYGV TQLSLPTSAF ARPYTPLPST TDPSRSNPKE QLYPERPGEP  300
ECQYYLRTGD CKFGLACRYH HPVARPLLSP VGLPLRPGLQ PCAFYLQNGH CKFGSTCKFD  360
HPLGSMRYSP SASSLIDVPV TPYPVGSLLS QLAPSTTSSD LRPELMSGSK KESFSARIPS  420
SGNSSGTSVG LIFSQGGSVS LSDVQLSSQS NAPPNSSRST RQSGEIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN46585.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937450.0BT093745.1 Soybean clone JCVI-FLGm-17P23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518955.10.0zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_028207352.10.0zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0B2SNR80.0A0A0B2SNR8_GLYSO; Zinc finger CCCH domain-containing protein 32
STRINGGLYMA02G17260.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]