PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46661.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 26900.8 Da    PI: 8.8538
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46661.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.28.9e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+ +qvtf kRr g+lKKA+E+SvLCda+va+iifs++gkl+eyss
  KHN46661.1  9 KRIENKTSQQVTFFKRRSGLLKKASEISVLCDAQVALIIFSTKGKLFEYSS 59
                79***********************************************96 PP
2K-box73.27.3e-25871611488
       K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                    ++ e+ kL +++e L+r++ ++ G+dL++LslkeL++Leqq+e+slk+iR++Kn+++ +++++l kk+ke  
  KHN46661.1  87 PGFWSFEHIKLTAKVEVLERNIMNFFGNDLDPLSLKELHSLEQQIETSLKRIRTRKNQVMNQSVSDLHKKMKEKA 161
                 467999****************************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.333161IPR002100Transcription factor, MADS-box
CDDcd002656.57E-39275No hitNo description
SuperFamilySSF554552.62E-30278IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.28387175IPR002487Transcription factor, K-box
PfamPF014863.4E-2189159IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGRVQLKR IENKTSQQVT FFKRRSGLLK KASEISVLCD AQVALIIFST KGKLFEYSSE  60
RSMEDLLERY ERCSHTALAG ANNVESPGFW SFEHIKLTAK VEVLERNIMN FFGNDLDPLS  120
LKELHSLEQQ IETSLKRIRT RKNQVMNQSV SDLHKKMKEK AKTVTEGPHN GPETLGFDSS  180
TLNLSSPQLP PPPSPQRLVP SLTLSETMQG GTPVEETGEA QTVPSGNSLI PPWMLRCMSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-18170169MEF2C
5f28_B4e-18170169MEF2C
5f28_C4e-18170169MEF2C
5f28_D4e-18170169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN46661.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0985710.0BT098571.1 Soybean clone JCVI-FLGm-16N7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340272.11e-162MADS-box protein Dt2
RefseqXP_006602964.11e-162MADS-box protein Dt2 isoform X2
RefseqXP_028213064.11e-162truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotD7SMN64e-72FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A0B2SIV81e-177A0A0B2SIV8_GLYSO; Agamous-like MADS-box protein AGL8 like
STRINGGLYMA18G50910.11e-162(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.13e-65MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]