PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46799.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 353aa    MW: 39812.1 Da    PI: 9.1141
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46799.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.99.3e-5481381128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.... 95 
                 lppGfrFhPtdeel+ +yL kkv++ +l++ ++i+evdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++    
  KHN46799.1   8 LPPGFRFHPTDEELILHYLSKKVASIPLTV-SIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVTSlqgg 105
                 79**************************99.89***************988899****************************************99987 PP

         NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +e vg+kk Lvfykgr pkg+kt+W+mheyrl
  KHN46799.1 106 AQESVGVKKALVFYKGRPPKGVKTNWIMHEYRL 138
                 7788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-645165IPR003441NAC domain
PROSITE profilePS5100562.3038165IPR003441NAC domain
PfamPF023651.3E-279138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGSPESNLPP GFRFHPTDEE LILHYLSKKV ASIPLTVSII AEVDIYKLDP WDLPAKATFG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVT SLQGGAQESV GVKKALVFYK  120
GRPPKGVKTN WIMHEYRLVD NNKPIKLKDS SMRLDDWVLC RIYKKSKHAL TSTEASIGVG  180
EVDQAEEHLF QETLLPISKS PAPPPQNTLI SQKSVSFSNL LDAMDYSILS SFLSENHTNH  240
PPGVGSSAGF NTGNLDQQCS PINNNNPTNN YMFQKNPQLN PSVSNMENMM RPKRQVSNMD  300
EETLYPSKKY LSSSCNFPTN ISNQYENPQW NYLMKQSLMN QRLMLGPHLQ FQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-74716916169NO APICAL MERISTEM PROTEIN
1ut4_B1e-74716916169NO APICAL MERISTEM PROTEIN
1ut7_A1e-74716916169NO APICAL MERISTEM PROTEIN
1ut7_B1e-74716916169NO APICAL MERISTEM PROTEIN
3swm_A2e-74716919172NAC domain-containing protein 19
3swm_B2e-74716919172NAC domain-containing protein 19
3swm_C2e-74716919172NAC domain-containing protein 19
3swm_D2e-74716919172NAC domain-containing protein 19
3swp_A2e-74716919172NAC domain-containing protein 19
3swp_B2e-74716919172NAC domain-containing protein 19
3swp_C2e-74716919172NAC domain-containing protein 19
3swp_D2e-74716919172NAC domain-containing protein 19
4dul_A1e-74716916169NAC domain-containing protein 19
4dul_B1e-74716916169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN46799.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6573080.0KF657308.1 Glycine max NAC transcription factor (SNAC62) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028206784.10.0NAC transcription factor 47-like
SwissprotQ84TD61e-109NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A445GE580.0A0A445GE58_GLYSO; NAC transcription factor 47
TrEMBLI1ML430.0I1ML43_SOYBN; Uncharacterized protein
STRINGGLYMA16G04740.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-110NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]