PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46918.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 173aa    MW: 19697.9 Da    PI: 8.0794
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46918.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS25.81.2e-081563896
        GRAS 38 mqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96
                mqRl ay++eAL arla++++++ykal+  e++    +e l+++++++++s  +kf+++
  KHN46918.1  1 MQRLGAYMLEALVARLASTGTTIYKALKYYEAA---NEEDLSYMHMLHQISLSFKFGYM 56
                8***************************99999...89999***************997 PP
2GRAS66.93.9e-2158153137235
        GRAS 137 egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                 +gp ++RiT++g+  s+s+++++ +g++L+k+Ae ++v fef+v va    d++l++Lrv+++ alaVn++++lh+++desv ++++rd++L+l ++ s
  KHN46918.1  58 RGPLHIRITAIGD--STSSDAMQMVGNKLSKLAEDFKVLFEFDV-VAIFACDVQLQNLRVQSRVALAVNFAFMLHQMPDESVITQNQRDRLLNLTQTFS 153
                 5788*********..55**************************9.6888999*****************************************988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035144.2E-6156IPR005202Transcription factor GRAS
PROSITE profilePS5098514.541173IPR005202Transcription factor GRAS
PfamPF035141.4E-1858153IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MQRLGAYMLE ALVARLASTG TTIYKALKYY EAANEEDLSY MHMLHQISLS FKFGYMSRGP  60
LHIRITAIGD STSSDAMQMV GNKLSKLAED FKVLFEFDVV AIFACDVQLQ NLRVQSRVAL  120
AVNFAFMLHQ MPDESVITQN QRDRLLNLTQ TFSNSFHVCL KLWTIITKQC LSQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN46918.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234367.16e-55scarecrow-like protein 21
SwissprotQ9LDL71e-40PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0B2SQ061e-126A0A0B2SQ06_GLYSO; Scarecrow-like transcription factor PAT1
STRINGGLYMA02G47640.41e-50(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.24e-43GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]