PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46940.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 237aa    MW: 26821.7 Da    PI: 10.0348
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46940.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.22.2e-291471155
     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktile...lmkvkgLtlehvkSHLQkYRl 55
                k+rlrWt+eLH+rFveav++LGG+e+AtPk il+   +m+v  L ++hvkSHLQkYR+
  KHN46940.1 14 KERLRWTQELHDRFVEAVNRLGGPERATPKGILKemkAMGVSELNIYHVKSHLQKYRI 71
                68******************************7511167788999************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.8971174IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-271272IPR009057Homeodomain-like
SuperFamilySSF466893.58E-151371IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-221472IPR006447Myb domain, plants
PfamPF002494.6E-81670IPR001005SANT/Myb domain
PfamPF143791.4E-12103142IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0034256Molecular Functionchlorophyll(ide) b reductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGSKQRLRGS ATAKERLRWT QELHDRFVEA VNRLGGPERA TPKGILKEMK AMGVSELNIY  60
HVKSHLQKYR ISKLIPESPT RGKLEKRSMS DILPNFSSIT ALQLKEVLQM QTGMQNRLRD  120
KTEVQRSLKL KIEAQGKYFE RIGQSNHSKT IIGKACKPFA TTIASLPSLF EESESLKTQP  180
EEEHQSAKKQ KISGEGVFPT SFDHESSTPP ECYNETWDFS WSQLAAACQS PLVPSFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-211473157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-211473157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-211473157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-211473157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN46940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0922230.0BT092223.1 Soybean clone JCVI-FLGm-10K14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028213557.11e-177myb family transcription factor PHL7-like
SwissprotQ9SJW02e-43PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0B2SPT91e-175A0A0B2SPT9_GLYSO; Myb family transcription factor APL
STRINGGLYMA18G43130.21e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106592535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.12e-45G2-like family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]