PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN47045.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 117aa    MW: 13130 Da    PI: 7.6148
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN47045.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS934.5e-291112258374
        GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.s 355
                 +e+l++ysa+fdslea++p + ++r+ vEr++lg++iv  +a  g+e     e+ ++W e+l++aGF+ vp+s  + +qakll+  ++ dgyrvee   
  KHN47045.1   1 MESLHHYSAVFDSLEAGFPMQGRARALVERVFLGPRIVGSLARMGEE-----EERGSWGEWLGAAGFRGVPMSFANHCQAKLLIGLFN-DGYRVEELgT 93 
                 69********************************************9.....88899*******************************.******9868 PP

        GRAS 356 gslvlgWkdrpLvsvSaWr 374
                 + lvl Wk+r+L+s+S W+
  KHN47045.1  94 NKLVLDWKSRRLLSASLWT 112
                 9999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.206192IPR005202Transcription factor GRAS
PfamPF035141.6E-261112IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MESLHHYSAV FDSLEAGFPM QGRARALVER VFLGPRIVGS LARMGEEEER GSWGEWLGAA  60
GFRGVPMSFA NHCQAKLLIG LFNDGYRVEE LGTNKLVLDW KSRRLLSASL WTQINSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-141112264379Protein SCARECROW
5b3h_A3e-141112263378Protein SCARECROW
5b3h_D3e-141112263378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN47045.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150358e-97AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527930.21e-73nodulation-signaling pathway 2 protein
RefseqXP_028235850.11e-73nodulation-signaling pathway 2 protein-like
SwissprotQ5NE244e-61NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A445K7Z13e-72A0A445K7Z1_GLYSO; Nodulation-signaling pathway 2 protein
TrEMBLK7KUH03e-72K7KUH0_SOYBN; Uncharacterized protein
STRINGGLYMA06G11610.26e-73(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-33GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]