PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN47208.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WOX

Protein Properties

Length: 320aa MW: 35330.4 Da PI: 6.8379

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN47208.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.7	9.3e-09	3	40	24	57
S--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 24 ypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +p ++e++++ +l ++ +++V++WFqNr+ + k+ KHN47208.1 3 NPPRDEIRKIRVQLqeygQVGDANVFYWFQNRKSRSKH 40 7999*******************************995 PP
2	Wus_type_Homeobox	66.5	5e-22	1	41	24	64
Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++P+++ei++i+ +L+eyG+++d+NVfyWFQNrk+R+++k KHN47208.1 1 MVNPPRDEIRKIRVQLQEYGQVGDANVFYWFQNRKSRSKHK 41 78*************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.61E-5	3	45	IPR009057	Homeodomain-like
Pfam	PF00046	3.2E-6	3	40	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MVNPPRDEIR KIRVQLQEYG QVGDANVFYW FQNRKSRSKH KLRHFQNTKN QNNAEAQQQH 60 RVDASSSLSQ TTPLSSSSSS SDKSSSKELA YNPNGFSFGF SNVNDVAVPN SPTASVNQTY 120 FHPHNHSDNN LLPQEPFSFT MHNNNGQGFV DNNTITTLGF SVPQFSSNMM QSQLQCQQNV 180 GSCTSLLLSE IMSHGTFSKK DQDKALKIMH PQLSNFPLTS TPTTIIAPPI STVLDPSPIT 240 QLEGVGEVAA GDRAKCITVF INDVVFEIVM GPFNVRQAFG DEAVLIHSSG NPVPTDEWGI 300 TLHPLHHGAC YYLVCASLFI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN47208.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003541514.1	0.0	WUSCHEL-related homeobox 9
Refseq	XP_028186982.1	0.0	WUSCHEL-related homeobox 9-like
TrEMBL	A0A445I6A6	0.0	A0A445I6A6_GLYSO; WUSCHEL-related homeobox 8
TrEMBL	I1M048	0.0	I1M048_SOYBN; Uncharacterized protein
STRING	GLYMA13G24150.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3824	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	9e-23	homeobox-3

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]