PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN47309.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 490aa    MW: 51198.2 Da    PI: 7.8379
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN47309.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.57.9e-125075227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                +++ C +++rtG+C +G+rC+F+H++
  KHN47309.1 50 DEVDCTYYLRTGFCGFGSRCRFNHPR 75
                6789********************96 PP
2zf-CCCH35.31.9e-1196120327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C++f+rt tCk+G++Ck++H++
  KHN47309.1  96 QPVCQYFMRTRTCKFGSSCKYHHPR 120
                 689********************96 PP
3zf-CCCH35.91.3e-11144168226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C+++ +tG+Ck+G++CkF+H+
  KHN47309.1 144 GEKECSYYVKTGQCKFGATCKFHHP 168
                 6789********************9 PP
4zf-CCCH31.92.3e-10362385427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 + C ++a+ G Ck+G+ CkF H++
  KHN47309.1 362 PACTHYAQHGVCKFGSACKFDHPM 385
                 78********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.9E-54875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6524876IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-95075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-65076IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-55475IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-493120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84993121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-694120IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-996120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-498120IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5142169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.399142170IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-9144168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6144169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4148167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.014358386IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5358385IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-8361385IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5362387IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016740Molecular Functiontransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MEQYGSSEGS RSDPSPEWAE PEAQTGLEEP VWQLGMGGGA GEESYPQRPD EVDCTYYLRT  60
GFCGFGSRCR FNHPRDRAVV AGAERTAGEH PERVGQPVCQ YFMRTRTCKF GSSCKYHHPR  120
QAGAGGAAAT PVSLNYYGYP LRQGEKECSY YVKTGQCKFG ATCKFHHPVP AGIQIPPSPF  180
APVSPLPVPV PSPLYSTMQP PPGPSSQQIG VLVARPPMLP GSLVQSPYGP VVLSPAMVPI  240
SGWGPYQASA SGAVLPSGTP SNVGSAQLYG ITQLPSPAAA YPGPYPPSGS PVGPPSSSQK  300
EQAFPERSNQ PEYQYYLKTG EVKFGPSYRY NPPPDMSVPD MSAPKANVIL SPAGLPLRPG  360
APACTHYAQH GVCKFGSACK FDHPMGSMSY SPSASSLADM PVAPYPVGST IATLAPSSSS  420
SDLRPEPSSG SSKESVPSRM PSSTLTGSIG STLSTGGPIS QSSTQPPSQS SGPLAAVTST  480
TSSNVSHTSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN47309.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-125AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028191090.10.0zinc finger CCCH domain-containing protein 34-like
SwissprotQ84W911e-142C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A445I8900.0A0A445I890_GLYSO; Zinc finger CCCH domain-containing protein 58 isoform A
STRINGGLYMA13G28820.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-126C3H family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]