PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN47353.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 900aa    MW: 100305 Da    PI: 6.7557
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN47353.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.45.5e-23127232198
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE....E-SSS CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk....ldgrs 88 
                 f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F     l  ++
  KHN47353.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIwqviL-LNE 222
                 99*****************************8544444..48***********************************************855422.335 PP

                 EE..EEEEE- CS
          B3  89 efelvvkvfr 98 
                 + +l+++++r
  KHN47353.1 223 KNQLLLGIRR 232
                 6666777666 PP
2Auxin_resp1218.7e-40258341183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  KHN47353.1 258 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 341
                 79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-46112261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-40120247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.91E-21126232No hitNo description
PROSITE profilePS5086312.717127234IPR003340B3 DNA binding domain
SMARTSM010192.1E-22127234IPR003340B3 DNA binding domain
PfamPF023621.2E-21127233IPR003340B3 DNA binding domain
PfamPF065071.8E-34258341IPR010525Auxin response factor
PfamPF023092.9E-6765852IPR033389AUX/IAA domain
SuperFamilySSF542771.05E-5767842No hitNo description
PROSITE profilePS5174521.845767851IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 900 aa     Download sequence    Send to blast
MRLSSAGFSP PPQEGENRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE  60
VDAHIPNYPS LPPQLICQLH NMTMHADAET DEVYAQMTLQ PLNPQEQKEA YLPAELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWQVILL NEKNQLLLGI RRANRPQTVM  240
PSSVLSSDSM HLGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITGISDLDPV RWQNSHWRSV KVGWDESTAG DRQPRVSLWE  360
IEPLTTFPMY PSPFPLRLKR PWPPGLPSFH GMKDDDFGPN SPLLWLRDPD RGLPSLNFQG  420
IGINPWMQPR FDPTMLNMQT DMYQAAAVQD MRSLDPSKQH SASLLPFQQP QNFPNRTAAL  480
MQAQMLQQSQ PQQIFGNTQE NQHSPQSQAH LQQHLQHQHS FNSQHHHHHQ QQQQRQQHQV  540
VDNQQISSAV STMSQFVSAP QPQSPPMQAI SSMCQQQNFS DSNGNTVTTI VSPLHSILGS  600
FPQDETSHLL NLPRTSSWIP VQNSSGWPSK RVAVDPLLSS GASQCVLPQV EQLGQPQSTM  660
SQNAISLPPF PGRECSIDQE GSNDPQNHLL FGVNIEPSSL LMPNGMSSLK GVCGNNGSST  720
LPYQSSNYLN TTTRTDSSLN HGMTPNIGDS GFLQCLEEAG QGNPLNKTFV KVYKSGSFGR  780
SLDITKFSSY HELRGELARM FGLEGELEDP VRSGWQLVFV DRENDVLLLG DGPWPEFVNS  840
VWCIKILSPQ EVQQMGNNGL ELLNSFPIQR LSNGICDDYV SRQDPRNLGT GITTVGSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1581936250388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN47353.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542951.10.0auxin response factor 6 isoform X2
RefseqXP_028188981.10.0auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A445I8B60.0A0A445I8B6_GLYSO; Auxin response factor
TrEMBLI1M1J50.0I1M1J5_SOYBN; Auxin response factor
STRINGGLYMA13G29320.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]