PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN47370.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27201.6 Da    PI: 9.6093
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN47370.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-31958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  KHN47370.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 58
                79***********************************************8 PP
2K-box59.21.7e-2077179593
       K-box   5 sgks.leeakaeslqqelakLkkeienLq.............reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                 sg   ++ea+a+ +qqe++kL+++i+nLq              + ++++G++L+sL+ k+L++Le++Lek++++iRskK+  l+++ + l+ k  e ++
  KHN47370.1  77 SGAGsASEANAQFYQQEADKLRQQISNLQnnnrqveclfhalGQEKQMMGDSLGSLTAKDLKNLETKLEKGISRIRSKKEIDLHNNNQLLRAKIAESER 175
                 33445899*********************6655555555555344689*********************************************999999 PP

       K-box  90 enka 93 
                 ++++
  KHN47370.1 176 NHHN 179
                 9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.132161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-33274IPR002100Transcription factor, MADS-box
CDDcd002658.17E-45271No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-33323IPR002100Transcription factor, MADS-box
PfamPF003198.9E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-333859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.73387195IPR002487Transcription factor, K-box
PfamPF014863.6E-11120179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN  60
SVKATIERYK KASSDSSGAG SASEANAQFY QQEADKLRQQ ISNLQNNNRQ VECLFHALGQ  120
EKQMMGDSLG SLTAKDLKNL ETKLEKGISR IRSKKEIDLH NNNQLLRAKI AESERNHHNM  180
AVLPGGSNYD SMQSSQQQFD SRGYFQVTGL QPNNQYARQD QMSLQLVLYV VLLVTKGDDG  240
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-21173173Myocyte-specific enhancer factor 2B
1tqe_Q2e-21173173Myocyte-specific enhancer factor 2B
1tqe_R2e-21173173Myocyte-specific enhancer factor 2B
1tqe_S2e-21173173Myocyte-specific enhancer factor 2B
6c9l_A2e-21173173Myocyte-specific enhancer factor 2B
6c9l_B2e-21173173Myocyte-specific enhancer factor 2B
6c9l_C2e-21173173Myocyte-specific enhancer factor 2B
6c9l_D2e-21173173Myocyte-specific enhancer factor 2B
6c9l_E2e-21173173Myocyte-specific enhancer factor 2B
6c9l_F2e-21173173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN47370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3828330.0AY382833.1 Glycine max MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237504.11e-138MADS-box protein
RefseqXP_028188360.11e-138floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_028188361.11e-138floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_028188362.11e-138floral homeotic protein AGAMOUS-like isoform X2
SwissprotQ408721e-110AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLA0A445I8F61e-141A0A445I8F6_GLYSO; Floral homeotic protein AGAMOUS isoform B
STRINGGLYMA13G29510.11e-138(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-89MIKC_MADS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]