PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN47400.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 162aa    MW: 18517.1 Da    PI: 10.2999
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN47400.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.4e-0921442347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                      W++Ia +++ gRt++++k++w++y
       KHN47400.1 21 VWSLIAGRLP-GRTPNDVKNYWNTY 44
                     7*********.************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.175149IPR017930Myb domain
CDDcd001671.15E-61245No hitNo description
Gene3DG3DSA:1.10.10.603.3E-111351IPR009057Homeodomain-like
SuperFamilySSF466891.33E-71850IPR009057Homeodomain-like
PfamPF002492.9E-71944IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MFIKHFPKEN NKLAEKEDPK VWSLIAGRLP GRTPNDVKNY WNTYIRRKVS SSHKVVINEK  60
QKKTTVKPHV VIKPKARTFS RPSPSGLRGS SVLREEGGES GAKHCSTHHQ ACAASSEYIN  120
NWSTDQWWKT MMHDKGDNLD NNQCLLAYQD EVGKLKFIIL LS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN47400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0902990.0BT090299.1 Soybean clone JCVI-FLGm-4K7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541690.11e-99transcription factor MYB111
RefseqXP_028186595.11e-99transcription factor MYB111-like
TrEMBLA0A445I8I08e-99A0A445I8I0_GLYSO; Uncharacterized protein
STRINGGLYMA13G29891.12e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1672278
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56650.16e-12production of anthocyanin pigment 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]