PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN47583.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 107aa    MW: 12694.5 Da    PI: 10.3549
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN47583.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.6e-101861447
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     WT+eE+  ++ + +++   +W++I++++   +t+ q++s+  k+
       KHN47583.1 18 WTKEEHRSFLLGLEEYKESRWEKISEKFVPSKTPTQVVSHAKKF 61
                     *****************************9**********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.8731066IPR017930Myb domain
SuperFamilySSF466891.05E-131165IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-101363IPR006447Myb domain, plants
SMARTSM007171.4E-61464IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-81757IPR009057Homeodomain-like
CDDcd001671.65E-71862No hitNo description
PfamPF002491.0E-71860IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MLSSGSSQSI HSKKYIHWTK EEHRSFLLGL EEYKESRWEK ISEKFVPSKT PTQVVSHAKK  60
FFKWKNAPKK ERKRRSIHET TLDDIDMIVT PHIDQHNWLP PPPNFAV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN47583.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028220306.17e-74transcription factor DIVARICATA-like
TrEMBLA0A0B2SRR52e-72A0A0B2SRR5_GLYSO; Transcription factor MYB1R1
TrEMBLA0A445F1N65e-72A0A445F1N6_GLYSO; Transcription factor SRM1
STRINGGLYMA08G45255.11e-36(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13860414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.23e-16MYB family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]