PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN47699.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 207aa    MW: 23989.4 Da    PI: 9.073
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN47699.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-064362120
                EEETTTTEEESSHHHHHHHH CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                + C++C+k+F+r sn++ H+
  KHN47699.1 43 FACSICSKTFNRYSNMQMHM 62
                78*****************9 PP
2zf-C2H2171.7e-05127149123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C +Cgk+F  k + ++H +++
  KHN47699.1 127 FMCRKCGKTFAVKGDWRTHEKNC 149
                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.53E-63466No hitNo description
Gene3DG3DSA:3.30.160.601.1E-54362IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.6994370IPR007087Zinc finger, C2H2
SMARTSM003550.174365IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-7106147No hitNo description
Gene3DG3DSA:3.30.160.601.4E-6113147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704127147IPR007087Zinc finger, C2H2
SMARTSM0035535127147IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MIVHVKEEEE SSKRSFHGCP FNNQERRFWI PTPAQILVGP MQFACSICSK TFNRYSNMQM  60
HMWGHGSEFR KGPDSLKGTQ PAAVLRLPCY CYAQGCKINI NHPWAKPLKD FRTLQTHYKI  120
KHGTKPFMCR KCGKTFAVKG DWRTHEKNCG KLWYCTCGSD FKHKRSLKDH IRSFGKGHNP  180
HPPFEAFEDE KECITGSDED EVNAHHT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN47699.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959320.0BT095932.1 Soybean clone JCVI-FLGm-20I11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028201703.11e-158zinc finger protein WIP3-like
SwissprotQ9SGD11e-105ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A0B2ST501e-155A0A0B2ST50_GLYSO; Protein TRANSPARENT TESTA 1
STRINGGLYMA12G09400.11e-148(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-108WIP domain protein 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]