PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN47826.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 748aa MW: 83651.8 Da PI: 5.8423

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN47826.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.2	4.5e-21	93	148	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +rk +++t+eq++e+e+lF+++++p++++r++L+++lgL rqVk+WFqNrR++ k KHN47826.1 93 KRKYHRHTTEQIREMEALFKESPHPDEKQRQKLSQQLGLAPRQVKFWFQNRRTQIK 148 79999***********************************************9877 PP
2	START	227.1	5.1e-71	264	487	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 +a++a++el+k+a+ +ep+Wv+s+ e++n+de++++ + +++ +ea+r++ vv+m+l++l++++ld++ qW+e+++ ka t++vis KHN47826.1 264 VANRATEELIKMATMGEPLWVRSVetgrEILNYDEYVKEMAAENSgserpkTFIEASRETEVVFMDLPRLLQSFLDVN-QWKEMFPclisKAVTVDVIS 361 6899**********************************998889****************************.**************** PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178 +g ga+qlm+aelq+l+p+vp R+++fvR+++ql++++w+ivdvS+d +++ ++s+v+++++pSg++ie+ksngh+kv+wveh +++++++h KHN47826.1 362 NGegsnrnGAVQLMFAELQMLTPMVPtREVYFVRCCKQLSDEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSTIH 459 ****************************************************98.9*********************************** PP HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 179 wllrslvksglaegaktwvatlqrqcek 206 ++r +v+sgla+ga++w atlq +ce+ KHN47826.1 460 TMYRTIVNSGLAFGARHWIATLQLHCER 487 ************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-23	79	144	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.52E-21	80	151	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.236	90	150	IPR001356	Homeobox domain
SMART	SM00389	2.4E-18	92	154	IPR001356	Homeobox domain
Pfam	PF00046	2.8E-18	93	148	IPR001356	Homeobox domain
CDD	cd00086	5.16E-17	97	148	No hit	No description
PROSITE pattern	PS00027	0	125	148	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	39.403	254	490	IPR002913	START domain
SuperFamily	SSF55961	9.75E-33	256	487	No hit	No description
CDD	cd08875	9.15E-110	258	486	No hit	No description
SMART	SM00234	2.9E-73	263	487	IPR002913	START domain
Pfam	PF01852	5.4E-57	264	487	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	6.6E-6	360	487	IPR023393	START-like domain
SuperFamily	SSF55961	2.06E-12	517	737	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MGVNMSNTPP HTKDLFSSPV LSLSLAGIFR YAGEAAETSG MEMAGDEVRQ EDTADISSDN 60 SGPVRSRSEE DFDCDDVHDG DDKDNNDKNR KKKRKYHRHT TEQIREMEAL FKESPHPDEK 120 QRQKLSQQLG LAPRQVKFWF QNRRTQIKAL QERHENSLLK TELDKLREET KAMRETINKS 180 CCPNCGMVTA TIDASMSTEE KQLLIENAKL KAEVEKLRTA LGKFSPRTTS PTTSSAGHDE 240 EENRNSLGFY SVLFGLDKSR IMDVANRATE ELIKMATMGE PLWVRSVETG REILNYDEYV 300 KEMAAENSGS ERPKTFIEAS RETEVVFMDL PRLLQSFLDV NQWKEMFPCL ISKAVTVDVI 360 SNGEGSNRNG AVQLMFAELQ MLTPMVPTRE VYFVRCCKQL SDEQWAIVDV SIDKVEDNID 420 ASLVKCRKRP SGCIIEDKSN GHCKVIWVEH LECQKSTIHT MYRTIVNSGL AFGARHWIAT 480 LQLHCERLVF YMATNVPMKD STGVATLAGR KSILKLAQRM TWSFCHAIGA SSFHTWTMVT 540 SKTGEDIRIS SRKNLNDPGE PLGVILSAVS SVWLPVSTNV LFDFLRDEAR RSEWDIMSSG 600 GSVQSVANLA KGKDRGNVVN IQKIQSKDNS VWILQDSCTS AYESMVVYAP VEFAGIQSVL 660 TGCDSSNLAI LPSGFSILPD GIEGRPLVIS SRQEEKYTEG GSLFTMAFQI LVNPSPTAKL 720 TTESVESVNN LVSCTLRNIK TSLQCEDG

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MGVNMSNTPP HTKDLFSSPV LSLSLAGIFR YAGEAAETSG MEMAGDEVRQ EDTADISSDN  60
SGPVRSRSEE DFDCDDVHDG DDKDNNDKNR KKKRKYHRHT TEQIREMEAL FKESPHPDEK  120
QRQKLSQQLG LAPRQVKFWF QNRRTQIKAL QERHENSLLK TELDKLREET KAMRETINKS  180
CCPNCGMVTA TIDASMSTEE KQLLIENAKL KAEVEKLRTA LGKFSPRTTS PTTSSAGHDE  240
EENRNSLGFY SVLFGLDKSR IMDVANRATE ELIKMATMGE PLWVRSVETG REILNYDEYV  300
KEMAAENSGS ERPKTFIEAS RETEVVFMDL PRLLQSFLDV NQWKEMFPCL ISKAVTVDVI  360
SNGEGSNRNG AVQLMFAELQ MLTPMVPTRE VYFVRCCKQL SDEQWAIVDV SIDKVEDNID  420
ASLVKCRKRP SGCIIEDKSN GHCKVIWVEH LECQKSTIHT MYRTIVNSGL AFGARHWIAT  480
LQLHCERLVF YMATNVPMKD STGVATLAGR KSILKLAQRM TWSFCHAIGA SSFHTWTMVT  540
SKTGEDIRIS SRKNLNDPGE PLGVILSAVS SVWLPVSTNV LFDFLRDEAR RSEWDIMSSG  600
GSVQSVANLA KGKDRGNVVN IQKIQSKDNS VWILQDSCTS AYESMVVYAP VEFAGIQSVL  660
TGCDSSNLAI LPSGFSILPD GIEGRPLVIS SRQEEKYTEG GSLFTMAFQI LVNPSPTAKL  720
TTESVESVNN LVSCTLRNIK TSLQCEDG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269\|PubMed:11844112}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN47826.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by GEM. {ECO:0000269\|PubMed:17450124}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031164	0.0	KT031164.1 Glycine max clone HN_CCL_123 homeodomain/HOMEOBOX transcription factor (Glyma07g02220.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028245484.1	0.0	homeobox-leucine zipper protein GLABRA 2-like
Swissprot	P46607	0.0	HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBL	A0A0B2SMH3	0.0	A0A0B2SMH3_GLYSO; Homeobox-leucine zipper protein GLABRA 2
STRING	GLYMA08G21890.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4714	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Wu R,Citovsky V Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development. Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553 [PMID:28526410]