PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN47911.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 665aa    MW: 73481 Da    PI: 6.1633
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN47911.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS320.34e-983096643374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 ++L++ Ae +++g+   aq +Larl+++ sp g+p+qR+a+y++eAL + l++   +  + ++ s+    + + ++ a+k fse+sP+l+f+++t+Nqa
  KHN47911.1 309 DQLYKTAELIEAGNPVHAQGILARLNHQLSPIGKPFQRAAFYMKEALMSLLHS---NAHSFMAFSPI---SFIFKIGAYKSFSEISPVLQFANFTCNQA 401
                 689*************************************************9...44444445555...59*************************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.rvkpg 199
                 + eave+ +r+H+iDfdi+ G+QW +++q+La R++g+psl++T+++sp++ ++ el+ t+e+L ++A+ ++v+fe nv+  ++l++ +   L ++  +
  KHN47911.1 402 LIEAVERFDRIHVIDFDIGFGVQWSSFMQELALRSSGAPSLKVTAIVSPSTCDEVELNFTRENLIQYAKDINVSFELNVFSIESLNSASCPLLgQFFDN 500
                 ********************************************************************************9999****9999966778* PP

        GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                 Ea+aVn+ ++ ++ +  ++  +    +vL++vk+l+Pkvvv  ++ +d+ + ++ + +++ l++ysal++sl+a    + ++ +k+Er++++++i++++
  KHN47911.1 501 EAIAVNMPVSSFTNY--PALFP----SVLHFVKQLRPKVVVTLDRICDRIDVPLPTNVVHVLQCYSALLESLDAV-NVNLDALQKIERHFIQPAIKKII 592
                 *********888877..55555....5*********************************************665.3566999**************** PP

        GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    + +    +e+l  Wr+ + ++GF+p ++s+++++qa++l+++ +++g++ve +  slvl+W++++L+svS Wr
  KHN47911.1 593 LGHHHS----QEKLPPWRNLFIQSGFSPFTFSNFTEAQAECLVQRAPVRGFHVERKPSSLVLCWQRKELISVSTWR 664
                 *99998....9****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.301281644IPR005202Transcription factor GRAS
PfamPF035141.4E-95309664IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MSSSLGSSSN NSTSKGGGGS GTSANPTTNP TPPSGNNNNN PPQESSPEKC GIRMEDWEGQ  60
DQSILRLIMG DVEDPSAGLS KLLQSTACGS QSVDFNAGFG VVDQQGLNMN MNMVSSGNID  120
QNYPAGFPFI AENIDGQNAK AGSGTGQVSE SVVFSGNNPL MVSTSVSPGV FTSQQQQEFG  180
VVDEKPQVIN PQFMLNQNQV QFSENPSFFV PLMYPQVQVQ EQQVFSPPHQ SKRPLFDTIG  240
HNFQAPRLPL LDSGQEVFGR RQQTQLPLFP HHMQQQQQQQ SMGLPSAKQQ KVSSTGDDAS  300
HQFQQAIFDQ LYKTAELIEA GNPVHAQGIL ARLNHQLSPI GKPFQRAAFY MKEALMSLLH  360
SNAHSFMAFS PISFIFKIGA YKSFSEISPV LQFANFTCNQ ALIEAVERFD RIHVIDFDIG  420
FGVQWSSFMQ ELALRSSGAP SLKVTAIVSP STCDEVELNF TRENLIQYAK DINVSFELNV  480
FSIESLNSAS CPLLGQFFDN EAIAVNMPVS SFTNYPALFP SVLHFVKQLR PKVVVTLDRI  540
CDRIDVPLPT NVVHVLQCYS ALLESLDAVN VNLDALQKIE RHFIQPAIKK IILGHHHSQE  600
KLPPWRNLFI QSGFSPFTFS NFTEAQAECL VQRAPVRGFH VERKPSSLVL CWQRKELISV  660
STWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-2831366324377Protein SCARECROW
5b3h_D7e-2831366324377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN47911.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028238035.10.0scarecrow-like protein 6
SwissprotO813161e-129SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A0B2SMP10.0A0A0B2SMP1_GLYSO; Scarecrow-like protein 6
STRINGGLYMA01G33270.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-131GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]