PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN47913.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 222aa    MW: 25309.9 Da    PI: 7.3921
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN47913.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS78.41.3e-2475200224354
        GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                  ++vL++vk+l+Pkvvv  +q+ d  + +F   +++a ++ys+l++sl++    + +  +++E++++ + i++++          +e+l +Wr+++ + 
  KHN47913.1  75 FPSVLRFVKQLRPKVVVTLDQNFDQIDVPFSSNVVHAHHCYSTLLESLDVA-NLNLDVLQNIENHFILPTIKKIILSPLGL----QEKLPTWRNMFLQY 168
                 578*********************************************877.34559999***************988777....8************* PP

        GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveee 354
                 GF+p p+s+++++qa+ l++k +++g+++e +
  KHN47913.1 169 GFSPFPFSNFTEAQAEGLVEKEPVKGFQLERK 200
                 *****************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.2591200IPR005202Transcription factor GRAS
PfamPF035144.4E-2275200IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MQPQVVPFAK QQKASSTGED ASHQLHHAIY DQLYKTVELI EAGNLVQAQG IFARLNHQLS  60
PIDKPFHRDN HPSLFPSVLR FVKQLRPKVV VTLDQNFDQI DVPFSSNVVH AHHCYSTLLE  120
SLDVANLNLD VLQNIENHFI LPTIKKIILS PLGLQEKLPT WRNMFLQYGF SPFPFSNFTE  180
AQAEGLVEKE PVKGFQLERK LSPLLYASRG KNSTQFQLRD AE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN47913.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490272.11e-66scarecrow-like protein 6 isoform X2
TrEMBLA0A0B2SSM71e-162A0A0B2SSM7_GLYSO; Scarecrow-like protein 6
STRINGXP_007134751.14e-63(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-35GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]