PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48036.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 189aa    MW: 21152.6 Da    PI: 10.0815
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48036.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.41.2e-302574150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  KHN48036.1 25 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 74
                79***********************************************8 PP
2K-box23.81.8e-0993128438
       K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhl 38 
                 ssg + ++ea+a+ +qqe+akL+ +i+nLq+ +R++
  KHN48036.1  93 SSGGRsASEANAQFYQQEAAKLRVQISNLQNHNRQV 128
                 44444599***********************99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.7261777IPR002100Transcription factor, MADS-box
SMARTSM004328.8E-421776IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-321890IPR002100Transcription factor, MADS-box
CDDcd002652.93E-441887No hitNo description
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-321939IPR002100Transcription factor, MADS-box
PfamPF003191.3E-262673IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-323954IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-325475IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MAFPNQSMSS ESPQRKMGRG KIEIKRIENT TSRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSNRGRL YEYANNSVKA SIERYKKASS DSSSGGRSAS EANAQFYQQE AAKLRVQISN  120
LQNHNRQVAL VVHIGEGERS HHNVNGLSGS TSYESMQSQF DSRGFFQVTG LQPNNNNQYA  180
GQDMSLQFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-201794178Myocyte-specific enhancer factor 2B
1tqe_Q1e-201794178Myocyte-specific enhancer factor 2B
1tqe_R1e-201794178Myocyte-specific enhancer factor 2B
1tqe_S1e-201794178Myocyte-specific enhancer factor 2B
6c9l_A1e-201794178Myocyte-specific enhancer factor 2B
6c9l_B1e-201794178Myocyte-specific enhancer factor 2B
6c9l_C1e-201794178Myocyte-specific enhancer factor 2B
6c9l_D1e-201794178Myocyte-specific enhancer factor 2B
6c9l_E1e-201794178Myocyte-specific enhancer factor 2B
6c9l_F1e-201794178Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48036.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0934340.0BT093434.1 Soybean clone JCVI-FLGm-14I9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028246935.11e-112floral homeotic protein AGAMOUS-like isoform X2
RefseqXP_028246936.11e-112floral homeotic protein AGAMOUS-like isoform X2
SwissprotQ408854e-69AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLI1KSJ11e-110I1KSJ1_SOYBN; Uncharacterized protein
STRINGGLYMA08G12730.21e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.13e-58MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]