PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN48149.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

M-type_MADS

Protein Properties

Length: 173aa MW: 19852 Da PI: 10.6193

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN48149.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68.5	6.4e-22	21	68	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + n+sn vtfskRr+gi+KKA+EL +LC++ vavi+fss ++++ + KHN48149.1 21 KMRNESNLRVTFSKRRTGIFKKASELATLCGVHVAVIMFSSGNRVFSF 68 5689****************************************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.656	12	72	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.7E-30	12	71	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-27	13	94	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.95E-33	13	82	No hit	No description
PRINTS	PR00404	8.2E-19	14	34	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.3E-23	22	68	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-19	34	49	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-19	49	70	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MPDLNGVAKK TKGRQKIEMK KMRNESNLRV TFSKRRTGIF KKASELATLC GVHVAVIMFS 60 SGNRVFSFGS PSVDSVVQRY KTQGPPPLLT LDLNKVHSTV DEVELHTHLH CLSNQIAIEK 120 KRTKDLNHLA KAAEDQFWWA RPIESMTDSQ LDKYKKMLEE FKRQLKEKRG NLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	1e-16	13	86	1	74	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	1e-16	13	86	1	74	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	1e-16	13	86	1	74	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	1e-16	13	86	1	74	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A	1e-16	13	86	1	74	Myocyte-specific enhancer factor 2A
3kov_B	1e-16	13	86	1	74	Myocyte-specific enhancer factor 2A
3kov_I	1e-16	13	86	1	74	Myocyte-specific enhancer factor 2A
3kov_J	1e-16	13	86	1	74	Myocyte-specific enhancer factor 2A
3p57_A	1e-16	13	86	1	74	Myocyte-specific enhancer factor 2A
3p57_B	1e-16	13	86	1	74	Myocyte-specific enhancer factor 2A
3p57_C	1e-16	13	86	1	74	Myocyte-specific enhancer factor 2A
3p57_D	1e-16	13	86	1	74	Myocyte-specific enhancer factor 2A
3p57_I	1e-16	13	86	1	74	Myocyte-specific enhancer factor 2A
3p57_J	1e-16	13	86	1	74	Myocyte-specific enhancer factor 2A
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN48149.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235843	0.0	AC235843.2 Glycine max clone GM_WBb0059O09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006589896.1	1e-125	agamous-like MADS-box protein AGL62
Refseq	XP_028184649.1	1e-125	agamous-like MADS-box protein AGL62
Swissprot	Q9FKK2	1e-40	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	A0A0B2SUE5	1e-126	A0A0B2SUE5_GLYSO; Agamous-like MADS-box protein AGL62
STRING	GLYMA10G10860.1	1e-124	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13864	5	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	5e-43	AGAMOUS-like 62

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]