PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48164.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 408aa    MW: 44644.3 Da    PI: 9.0642
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48164.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.4e-1857117257
                 T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                 ++R+++++eq+++Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  KHN48164.1  57 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 117
                 89*****************99*************************************995 PP
2Wus_type_Homeobox112.13e-3656118264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k
         KHN48164.1  56 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
                        689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-742116IPR009057Homeodomain-like
SuperFamilySSF466894.71E-1253121IPR009057Homeodomain-like
PROSITE profilePS5007110.51153118IPR001356Homeobox domain
SMARTSM003896.8E-955122IPR001356Homeobox domain
CDDcd000861.87E-856118No hitNo description
PfamPF000462.2E-1557117IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPCNPH HQWQHDINSS LISTSCHRSP YSSGGGGGCE ERSPEPKPRW  60
NPKPEQIRIL EAIFNSGMVN PPRDEIRKIR AQLQEYGQVG DANVFYWFQN RKSRSKHKLR  120
HLQNSSSKNL NHHHHLVDQN HHTPTSLPQT ATTAPSSSSS SSSEKSSPKE LIIPTTKVFS  180
IGFSDVMPNS PTASVNQTYF QTRINESIML PSPPPPVEAF FFPVQQQHHG VTSSSQGFCF  240
SELSNVVHQH NSVGPCTSLL LSEIVGHGVA SASASKKDKS QVKIMHQPSL LNFCVTTPTT  300
TAPSTTTTVV VPPITTTSST TIPSPLMHQL QGIGDPGGAA RSMVFINDVA FEVALGPFNV  360
REAFGDDAVL IHASTGQPVL TNQWGLTLHS LQHGACYYLV RKIALSLV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48164.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0957160.0BT095716.1 Soybean clone JCVI-FLGm-25E14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028197052.10.0WUSCHEL-related homeobox 9-like
TrEMBLA0A445HGE80.0A0A445HGE8_GLYSO; WUSCHEL-related homeobox 9 isoform A
STRINGGLYMA13G21860.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38243361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.13e-62homeobox-3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]