PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN48185.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 607aa MW: 70125.5 Da PI: 6.734

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN48185.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92	6e-29	135	220	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++ ++++++ k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r+ + +++++f+qlea KHN48185.1 135 RWPRQETLTLLEIRSRLDPKFKEANHKGPLWDEVSRIMcEEHGYKRSGKKCREKFENLYKYYKKTKEGKAGRH--DGKHYRFFRQLEA 220 8*********************************998***************************985..5557*****85 PP
2	trihelix	42.8	1.4e-13	448	526	2	84
trihelix 2 WtkqevlaLiearremeerlrrgk.lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 W+++e+ L ++r eme r++ ++ +++ W+ v+ km+ g+ers+ +Ckekwe++nk+ ++++kk ++e+s++c yf++ KHN48185.1 448 WQESEITRLQQLRAEMEIRFQYSEmSEEVSWDVVATKMACFGYERSALMCKEKWESINKE----ENNNKK-RKENSRSCFYFKN 526 *******************7654899***************************85....444444.467888999985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.027	128	193	IPR017877	Myb-like domain
SMART	SM00717	0.0058	132	195	IPR001005	SANT/Myb domain
Pfam	PF13837	7.3E-20	135	221	No hit	No description
CDD	cd12203	3.17E-20	135	200	No hit	No description
SMART	SM00717	0.33	444	507	IPR001005	SANT/Myb domain
Pfam	PF13837	1.9E-9	446	526	No hit	No description
PROSITE profile	PS50090	6.295	447	505	IPR017877	Myb-like domain
CDD	cd12203	8.66E-16	448	507	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence Send to blast
MEDHHLHQHQ HQHHFSMNDL RQVVNNGPRP AHTTFSSMPP HPTFPGNHHH HHHHHHHRNL 60 TPLPTHHPQQ HQHFEVMMFG CDIMPPGLHD FANSIPHDSA TAAVTTITLP SPPVTSGFDV 120 AEGAACIGGD PSTGRWPRQE TLTLLEIRSR LDPKFKEANH KGPLWDEVSR IMCEEHGYKR 180 SGKKCREKFE NLYKYYKKTK EGKAGRHDGK HYRFFRQLEA LYGENSNTVS LPETNVAVGS 240 IHFQGSPSQT NQDNNKFRSH NNNNTKHCDS LSLTNSSNFG TSTSEDDDGD GGSDHGMENE 300 SMEKRRKRKS GRSWKVKIKD FIDSQMRKLV EKQKEWLDKL VKTLEEKEKE RMLREEEWRK 360 QEANRLEREH KFWAKERAWI EARDAALMEA LHKLTGTEIM KPETDPEGTI NAMPAEEVQN 420 HRENNQNNED ESEILNNSNI VISGADSWQE SEITRLQQLR AEMEIRFQYS EMSEEVSWDV 480 VATKMACFGY ERSALMCKEK WESINKEENN NKKRKENSRS CFYFKNNEDQ QHSSLYDQGN 540 AYCEDDVNDQ GKEIQRLQTN NGSSLPSKSN VGNVAPSDSC FPFLMSAEGG NLWENYGLKL 600 NKENQNH

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence Send to blast

MEDHHLHQHQ HQHHFSMNDL RQVVNNGPRP AHTTFSSMPP HPTFPGNHHH HHHHHHHRNL  60
TPLPTHHPQQ HQHFEVMMFG CDIMPPGLHD FANSIPHDSA TAAVTTITLP SPPVTSGFDV  120
AEGAACIGGD PSTGRWPRQE TLTLLEIRSR LDPKFKEANH KGPLWDEVSR IMCEEHGYKR  180
SGKKCREKFE NLYKYYKKTK EGKAGRHDGK HYRFFRQLEA LYGENSNTVS LPETNVAVGS  240
IHFQGSPSQT NQDNNKFRSH NNNNTKHCDS LSLTNSSNFG TSTSEDDDGD GGSDHGMENE  300
SMEKRRKRKS GRSWKVKIKD FIDSQMRKLV EKQKEWLDKL VKTLEEKEKE RMLREEEWRK  360
QEANRLEREH KFWAKERAWI EARDAALMEA LHKLTGTEIM KPETDPEGTI NAMPAEEVQN  420
HRENNQNNED ESEILNNSNI VISGADSWQE SEITRLQQLR AEMEIRFQYS EMSEEVSWDV  480
VATKMACFGY ERSALMCKEK WESINKEENN NKKRKENSRS CFYFKNNEDQ QHSSLYDQGN  540
AYCEDDVNDQ GKEIQRLQTN NGSSLPSKSN VGNVAPSDSC FPFLMSAEGG NLWENYGLKL  600
NKENQNH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN48185.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028196308.1	0.0	trihelix transcription factor PTL-like
Swissprot	Q9LZS0	1e-130	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A445HGB1	0.0	A0A445HGB1_GLYSO; Trihelix transcription factor PTL
STRING	GLYMA10G07730.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2022	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-101	Trihelix family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]