PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48253.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 464aa    MW: 52579.2 Da    PI: 7.5668
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48253.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.4e-07339386448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E ++lv+++ ++G g+W+ I r +      Rt+ +++++w+++l
       KHN48253.1 339 WTLPEVLKLVEGISEYGVGRWTDIKRFLFsssSYRTPIDLRDKWRNLL 386
                      9***************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-11330393IPR009057Homeodomain-like
PROSITE profilePS5129413.177330390IPR017930Myb domain
SMARTSM007172.9E-8335388IPR001005SANT/Myb domain
CDDcd116601.71E-16337387No hitNo description
SuperFamilySSF466891.57E-15338405IPR009057Homeodomain-like
PfamPF139215.1E-5339397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDREEYLRKC SNMKCQRVQV DESFVPALQD EVMEVEHLLA EPRNVHASLD GSLDSHTTLN  60
DKDDLELEVL DGLLDDVEID DLEGTGGFAG ACEEYFLDFG FADKFEEVLG SGPFEGSLLQ  120
ISSSESHSSG LSGSSIVGGV LESTKVPIAK SECKNDSLDE TITYEAHGAF RNNPSQPSKV  180
NCRYNISLDI QHLQELDNNS HLAAGILTCK KGKGPVEKGQ PAVLREKRFR KPTQRYIEEF  240
SNSRSKEKAP TAVTKTEHLS DSSCDVLHIR IKALKKSPSE KSSNENSDVM LPELQVRKRR  300
LEKEKLEYDK ELFPSESEDE CSTSKRSRRK DRRKHQKMWT LPEVLKLVEG ISEYGVGRWT  360
DIKRFLFSSS SYRTPIDLRD KWRNLLRASS AQKTSREAEQ NDELALRPLP FNVVHRVREL  420
AKIHPYPRQR GSKRLRVSQA GSSIIAKDSP PLSLSKRNVR RKFT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324332KRSRRKDRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48253.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0982550.0BT098255.1 Soybean clone JCVI-FLGm-16F17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028197467.10.0uncharacterized protein LOC114382337 isoform X1
TrEMBLA0A445HG500.0A0A445HG50_GLYSO; Uncharacterized protein
STRINGGLYMA13G20760.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.18e-24TRF-like 6
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]