PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN48423.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 2417aa MW: 265857 Da PI: 5.2521

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN48423.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113.9	7e-36	2121	2175	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ KHN48423.1 2121 PNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 2175 58***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-24	2107	2166	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.677	2121	2175	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-30	2122	2175	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	2123	2159	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2417 aa Download sequence Send to blast
MGRPEPCVLF AQNFVHTHLD EYVDEVMFSE PIVITACEFL EQTASSAAQA VTLVGATSPP 60 SFAIEVFVHC EGETRFRRLC QPFLYSHSSS NVLEVEAVVT SHLVVRGSYR SLSLVIYGNT 120 AEDLGQFNID IDDNALTDLV DSTEGKLEDL PPALRSTNFT IDDSRSSLRV LSIPVPATDI 180 SVEVNLFLQL MLKILEFSEL GDAGHKIVDP VVSAITSYIS SDICESIGGR YQMQKRSENL 240 EELHSVVNEG RKELLEVYKV LHKKIRSGSS ECSPDANYLE MDAEMLDSKT LVDMFNQYFH 300 FQRHSSCIGD HCLSQSEHAL LILSMAYLLC SGRESGFQFV SSGGMEQLAV FFSKDWQNST 360 TIMLLLLGVV ERATRYSVGC EAFLGWWPRE DENIPSSISE GYSHLLKLIL SKPRHDVASL 420 ATYLLHRLRF YEIASRYESA VLSVLGNIGT VGRVTDVTLN MLSSAEILLR KLLKLINSRG 480 PIEDPSPIAC ASRSLITGQT DGLLSYKTTS SLISSSSCCF SDCDIDSHLL GLLKERGFLS 540 LSTALLSSSI LRVESGHVME IFMDVTSSIE AVILSFLFCR SGLILLLQDP ELSSTLIRAL 600 RGGHRGNKED CIPLRYASIL ISKGFFCSPP EIGMIIEIHL KMVNAVDSLL SLNPQSEEFL 660 WVVWELSMLS RSDCGRQALL ALGNFPEAVS FLIEALSSIK ESESVGKSSG SSAVNLTIFH 720 SAAEIIEAIV TDSTASSLGS WIGHALELHR ALNFSSPGSN RKDAPSRLLE WIDAGVVFHK 780 QGGIGLLRYA AVLASGGDAQ LTSVLVSDLT DVETVVGESS SCSDINVMEN LGKFISEKSF 840 DGVTLRDSSL AQLTTALRIL SFISENPTVA ATLYDEGAVI VIYAILVNCR FMLERSSNNY 900 DYLVDEGTEC NATSDLLLER NRELNIVDLL VPSLVLLITL LKKLQEAKEQ HRNTKLMNAL 960 LRLHREISPK LAACADDFSS PYPDYAIGYG AVCHLVASAL AFWPVHGWSP GLFHTLLASV 1020 QSTSLLTLGP KETCSLLYLL IDLLPEEDIW LWTSGMPLLT ARRMLAVGNI LGPQKEKHIN 1080 WYLESGHQEK LVGQLAPHLD KIAEIIQHYA VSALVVIQDL LCVFVIRIAC QNAKYASMLM 1140 EPVLSSVIHH VSESSCPSDT DAYKVLRLLD FLASLLEHPL GKVLPVGKEL LACLTAFKEL 1200 ASCGEGQMAF GATHFGIHSH ALELEPRKDD RNVNYVSSVA EWIKCPPLLS CWMKLLRSID 1260 TKEGLSTYAI EAAYALSVGS LQFCMNGDSL NSDRVVALKY LFGISDDMTR SVVFPEENIN 1320 YIQEFSALLS SKASMDDCLV TSHSQIPLYQ VSESVKSLSL VLERPVDSMK LEDVVLHQNE 1380 VLVFSKTHQL LENSVEKIDD HLYVGGLGDK FLWECPETLP DRLTQTNLAA KRKLPSMDGP 1440 VRRARGESFQ ADMSSQNVFS RGVAQSAVSS GPTRRDAFRQ RKPNTSRPPS MHVDDYVARE 1500 RNVEGVTNVI SVPRAGSTGG RPPSIHVDEF MARQRERQNP SATVVGEAVG HLKNASPVKP 1560 TDTEKLNKSK QLKTDLDDDL QGIDIVFDGE GSDPDDKLPF PQLDDNLQQP APAIVEQSSP 1620 HSIVEETESD VVDSSQFSQM GTPLGSNIDE NAQSEFSSKM SGSRPDMSLT RESSVSSDRK 1680 SAEQLDDSKN VQARPSGRYD SVASNTSFPM SLYNNPSASM QSPADSRMVS QNYLLKTSPQ 1740 HGGIASGSQG LYDQRFMPNQ PPLPPMPPPP TVLPVISHAS DSVPGHSSPY VNSPAGTQRP 1800 VAFQVQLDYS SPFNNGSTAA SSVPVPDSKY SRTSVSSPGG PNRIAPPLPP TPPPFASSQY 1860 NLPIVKASAS QPSMYNQTSI GATELSQASI ASSGARLSSY PNPSMMSVGF SRPASMPLTM 1920 FGNSLNQQQT ENQPSMLQSV SVPPSSFQSM HSVSQLQPPQ LPRPPQPPQL LRPTVQALQQ 1980 LEQGMGLQSN VQVHQLQMLQ QSQVPSMQTN YQTQQQQFSH EQQQQVEYTQ QPGNCQSQQQ 2040 QDAAMSLHEY FKSPEAIQSL LSDRDKLCQL LEQHPKLMQM LQNIDGQYYG WRVASDEKLE 2100 WGCVCFVVME SGWKPEVEIS PNCPRCGSSN TKFCYYNNYS LTQPRYFCKG CRRYWTKGGS 2160 LRNVPVGGGC RKNRRGNKTL LRQSIDGFTF KNSLPPCGNV TDHNNNPIGH SYDPRIRTSS 2220 ASSSSSVVSD GPHIDLALVY ANFLNQKPNS EARVESTNPD QVQTVFYPSL ENNSRLSNTV 2280 VVGPNTLPEE LGLTGCLNLP EQQPQTHSSE ANNNHNQMCY GEFNTMQTLH QKDGIDQQCS 2340 NHGGGAMNFE LPPLPGEEEV SHDHHMMWSN SEMMINHHHA FQVTQPPLLG PDVHDADLLI 2400 GNWSSFDLPR DASFSRP

Sequence ? help Back to Top

Protein Sequence Length: 2417 aa Download sequence Send to blast

MGRPEPCVLF AQNFVHTHLD EYVDEVMFSE PIVITACEFL EQTASSAAQA VTLVGATSPP  60
SFAIEVFVHC EGETRFRRLC QPFLYSHSSS NVLEVEAVVT SHLVVRGSYR SLSLVIYGNT  120
AEDLGQFNID IDDNALTDLV DSTEGKLEDL PPALRSTNFT IDDSRSSLRV LSIPVPATDI  180
SVEVNLFLQL MLKILEFSEL GDAGHKIVDP VVSAITSYIS SDICESIGGR YQMQKRSENL  240
EELHSVVNEG RKELLEVYKV LHKKIRSGSS ECSPDANYLE MDAEMLDSKT LVDMFNQYFH  300
FQRHSSCIGD HCLSQSEHAL LILSMAYLLC SGRESGFQFV SSGGMEQLAV FFSKDWQNST  360
TIMLLLLGVV ERATRYSVGC EAFLGWWPRE DENIPSSISE GYSHLLKLIL SKPRHDVASL  420
ATYLLHRLRF YEIASRYESA VLSVLGNIGT VGRVTDVTLN MLSSAEILLR KLLKLINSRG  480
PIEDPSPIAC ASRSLITGQT DGLLSYKTTS SLISSSSCCF SDCDIDSHLL GLLKERGFLS  540
LSTALLSSSI LRVESGHVME IFMDVTSSIE AVILSFLFCR SGLILLLQDP ELSSTLIRAL  600
RGGHRGNKED CIPLRYASIL ISKGFFCSPP EIGMIIEIHL KMVNAVDSLL SLNPQSEEFL  660
WVVWELSMLS RSDCGRQALL ALGNFPEAVS FLIEALSSIK ESESVGKSSG SSAVNLTIFH  720
SAAEIIEAIV TDSTASSLGS WIGHALELHR ALNFSSPGSN RKDAPSRLLE WIDAGVVFHK  780
QGGIGLLRYA AVLASGGDAQ LTSVLVSDLT DVETVVGESS SCSDINVMEN LGKFISEKSF  840
DGVTLRDSSL AQLTTALRIL SFISENPTVA ATLYDEGAVI VIYAILVNCR FMLERSSNNY  900
DYLVDEGTEC NATSDLLLER NRELNIVDLL VPSLVLLITL LKKLQEAKEQ HRNTKLMNAL  960
LRLHREISPK LAACADDFSS PYPDYAIGYG AVCHLVASAL AFWPVHGWSP GLFHTLLASV  1020
QSTSLLTLGP KETCSLLYLL IDLLPEEDIW LWTSGMPLLT ARRMLAVGNI LGPQKEKHIN  1080
WYLESGHQEK LVGQLAPHLD KIAEIIQHYA VSALVVIQDL LCVFVIRIAC QNAKYASMLM  1140
EPVLSSVIHH VSESSCPSDT DAYKVLRLLD FLASLLEHPL GKVLPVGKEL LACLTAFKEL  1200
ASCGEGQMAF GATHFGIHSH ALELEPRKDD RNVNYVSSVA EWIKCPPLLS CWMKLLRSID  1260
TKEGLSTYAI EAAYALSVGS LQFCMNGDSL NSDRVVALKY LFGISDDMTR SVVFPEENIN  1320
YIQEFSALLS SKASMDDCLV TSHSQIPLYQ VSESVKSLSL VLERPVDSMK LEDVVLHQNE  1380
VLVFSKTHQL LENSVEKIDD HLYVGGLGDK FLWECPETLP DRLTQTNLAA KRKLPSMDGP  1440
VRRARGESFQ ADMSSQNVFS RGVAQSAVSS GPTRRDAFRQ RKPNTSRPPS MHVDDYVARE  1500
RNVEGVTNVI SVPRAGSTGG RPPSIHVDEF MARQRERQNP SATVVGEAVG HLKNASPVKP  1560
TDTEKLNKSK QLKTDLDDDL QGIDIVFDGE GSDPDDKLPF PQLDDNLQQP APAIVEQSSP  1620
HSIVEETESD VVDSSQFSQM GTPLGSNIDE NAQSEFSSKM SGSRPDMSLT RESSVSSDRK  1680
SAEQLDDSKN VQARPSGRYD SVASNTSFPM SLYNNPSASM QSPADSRMVS QNYLLKTSPQ  1740
HGGIASGSQG LYDQRFMPNQ PPLPPMPPPP TVLPVISHAS DSVPGHSSPY VNSPAGTQRP  1800
VAFQVQLDYS SPFNNGSTAA SSVPVPDSKY SRTSVSSPGG PNRIAPPLPP TPPPFASSQY  1860
NLPIVKASAS QPSMYNQTSI GATELSQASI ASSGARLSSY PNPSMMSVGF SRPASMPLTM  1920
FGNSLNQQQT ENQPSMLQSV SVPPSSFQSM HSVSQLQPPQ LPRPPQPPQL LRPTVQALQQ  1980
LEQGMGLQSN VQVHQLQMLQ QSQVPSMQTN YQTQQQQFSH EQQQQVEYTQ QPGNCQSQQQ  2040
QDAAMSLHEY FKSPEAIQSL LSDRDKLCQL LEQHPKLMQM LQNIDGQYYG WRVASDEKLE  2100
WGCVCFVVME SGWKPEVEIS PNCPRCGSSN TKFCYYNNYS LTQPRYFCKG CRRYWTKGGS  2160
LRNVPVGGGC RKNRRGNKTL LRQSIDGFTF KNSLPPCGNV TDHNNNPIGH SYDPRIRTSS  2220
ASSSSSVVSD GPHIDLALVY ANFLNQKPNS EARVESTNPD QVQTVFYPSL ENNSRLSNTV  2280
VVGPNTLPEE LGLTGCLNLP EQQPQTHSSE ANNNHNQMCY GEFNTMQTLH QKDGIDQQCS  2340
NHGGGAMNFE LPPLPGEEEV SHDHHMMWSN SEMMINHHHA FQVTQPPLLG PDVHDADLLI  2400
GNWSSFDLPR DASFSRP

Functional Description ? help Back to Top
Source	Description
UniProt	Subunit of the N6-methyltransferase complex, a multiprotein complex that mediates N6-methyladenosine (m6A) methylation at the 5'-[AG]GAC-3' consensus sites of some mRNAs (PubMed:28503769). Associates with MTA, MTB, FIP37 and HAKAI to form the m6A writer complex which is essential for adenosine methylation at specific mRNA sequences (PubMed:28503769). N6-methyladenosine (m6A) plays a role in mRNA stability, processing, translation efficiency and editing (PubMed:28503769). {ECO:0000269\|PubMed:28503769}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN48423.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025662047.1	0.0	protein virilizer homolog isoform X2
Swissprot	F4J8G7	0.0	VIR_ARATH; Protein virilizer homolog
TrEMBL	A0A0B2SU24	0.0	A0A0B2SU24_GLYSO; Dof zinc finger protein DOF3.5
STRING	GLYMA10G10154.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	9e-41	Dof family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Růžička K, et al. Identification of factors required for m6 A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI. New Phytol., 2017. 215(1): p. 157-172 [PMID:28503769]