PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48447.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 245aa    MW: 26982 Da    PI: 8.0123
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48447.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.64.7e-20175209135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg+ kTp+WR gp+g+ktLCnaCG+++++ +l
  KHN48447.1 175 CQHCGAEKTPQWRAGPSGPKTLCNACGVRFKSGRL 209
                 *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.3E-18169219IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.519169205IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-14171232No hitNo description
Gene3DG3DSA:3.30.50.102.3E-15173207IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.81E-14174221No hitNo description
PfamPF003201.7E-17175209IPR000679Zinc finger, GATA-type
PROSITE patternPS003440175200IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
METIGSVDDL LDFSSDIGEE DDYDDKPRKA CPSLNSKCAG PSLFNPLVQV DPNHSFSEFA  60
EEELEWLSNK DAFPSVETFV DLSSIQPGTI KNQKSAPVLE CSTGSSNSNN STNSISLLNS  120
CDHLKVPVRA RSKSRSRHRP GLAENSSQQV WWRQPSNGTS KADEGMKISS IGRKCQHCGA  180
EKTPQWRAGP SGPKTLCNAC GVRFKSGRLV PEYRPASSPT FHSDLHSNSH RKIVEMRRQK  240
QMGMG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48447.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0972870.0BT097287.1 Soybean clone JCVI-FLGm-16E7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028182966.10.0GATA transcription factor 1-like isoform X2
RefseqXP_028182967.10.0GATA transcription factor 1-like isoform X2
SwissprotQ8LAU94e-49GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A0B2SW050.0A0A0B2SW05_GLYSO; GATA transcription factor 1
STRINGGLYMA10G25480.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.15e-49GATA transcription factor 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]