PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48512.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 591aa    MW: 66145.5 Da    PI: 4.7618
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48512.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS444.67e-1362215912374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL++cA+++s+g+ e+a++++++l++++s +gdp qR+aay++e+Laar+a s++ +y+al+++e +   s ++laa+++++ev+P++kf++++aN 
  KHN48512.1 221 KQLLYDCARVLSEGNEEEATSMINKLRQMVSIQGDPSQRIAAYMVEGLAARVATSGKCIYQALRCKEPP---SNDRLAAMQILFEVCPCFKFGYIAANG 316
                 589*****************************************************************9...9************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 aI e v  e++vHiiDfdisqG+Q+++L+q+Las p+ pp++R+T+v++pes+  s   ++ +g+rL+k+Aeel++pfef++ va+r++ +++++L+++
  KHN48512.1 317 AIAEVVRDEKKVHIIDFDISQGTQYITLIQTLASMPGRPPRVRLTAVDDPESVqrSIGGINIIGQRLEKLAEELRLPFEFRA-VASRTSIVSPSMLNCR 414
                 ***************************************************99888899***********************.7*************** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 pgEal+Vn+++qlh++ de+vs+ +erd++L++vksl+Pk+v+vveq++++n+++Fl rf+e+ +yysa+fd+l+a+lpres++r++vEr++l+++ivn
  KHN48512.1 415 PGEALVVNFAFQLHHMRDETVSTVNERDQLLRMVKSLNPKIVTVVEQDMNTNTSPFLPRFIETYNYYSAVFDTLDATLPRESQDRMNVERQCLAKDIVN 513
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +vaceg+er+er e ++kWr+rl++aGF+p p+s+++ + ++ l+ k + d ++++ee g l +gW+d++L+++SaW+
  KHN48512.1 514 IVACEGEERIERYEVAGKWRARLSMAGFTPSPMSTNVREAIRNLIIKQYCDKFKIKEEMGGLHFGWEDKNLIVASAWK 591
                 *************************************************899*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.057194571IPR005202Transcription factor GRAS
PfamPF035142.4E-133221591IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MSLVISAELA DTSYGNAKLY TLKGTDVTPD LSSHNFAPDK HRNMYMTKSH SCESYAKYFR  60
DSPTEELIEP SSSSISGNSV HPDGASSYLL RASSGASVIV NNPFDTSIWS TRHRDAYQSN  120
SGSDFVENGS PDGLDFDGEM RLKLQELERA LLSDEEEEEE GMFETVQSME IDPDMVEWAN  180
PLQDMLLHDS PKESSSSDSS NLTSISSTTK DTSQNSPQTP KQLLYDCARV LSEGNEEEAT  240
SMINKLRQMV SIQGDPSQRI AAYMVEGLAA RVATSGKCIY QALRCKEPPS NDRLAAMQIL  300
FEVCPCFKFG YIAANGAIAE VVRDEKKVHI IDFDISQGTQ YITLIQTLAS MPGRPPRVRL  360
TAVDDPESVQ RSIGGINIIG QRLEKLAEEL RLPFEFRAVA SRTSIVSPSM LNCRPGEALV  420
VNFAFQLHHM RDETVSTVNE RDQLLRMVKS LNPKIVTVVE QDMNTNTSPF LPRFIETYNY  480
YSAVFDTLDA TLPRESQDRM NVERQCLAKD IVNIVACEGE ERIERYEVAG KWRARLSMAG  540
FTPSPMSTNV REAIRNLIIK QYCDKFKIKE EMGGLHFGWE DKNLIVASAW K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6622759025377Protein SCARECROW
5b3h_D2e-6622759025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48512.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311600.0KT031160.1 Glycine max clone HN_CCL_175 GRAS transcription factor (Glyma14g27290.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544730.10.0scarecrow-like protein 1
RefseqXP_014622473.10.0scarecrow-like protein 1
RefseqXP_028198665.10.0scarecrow-like protein 1
RefseqXP_028198666.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0B2SW590.0A0A0B2SW59_GLYSO; Scarecrow-like protein 1
TrEMBLI1MAD80.0I1MAD8_SOYBN; GRAS transcription factor
STRINGGLYMA14G27290.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]